View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_13 (Length: 478)
Name: NF5999_low_13
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_13 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 478
Target Start/End: Complemental strand, 9999720 - 9999256
Alignment:
| Q |
14 |
ttgtaagaccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999720 |
ttgtaagaccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggtaactgatcaacagtcttaaaccatgtccttggaagttt |
9999621 |
T |
|
| Q |
114 |
accggtaaatccataatcaccaaacaaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
9999620 |
accggtaaatccataatcaccaaacaaaacatcggcaacaccagaaccttcactaccaggaagccaatcatccacaagtccttcaattttctcaagatat |
9999521 |
T |
|
| Q |
214 |
ggttgtataacaataggtctaccggcgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgtta |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9999520 |
ggttgtataacaataggtctaccggtgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagagattgtta |
9999421 |
T |
|
| Q |
314 |
agtttaagctgtcaccatttgtttcagcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtccaatgaaggatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9999420 |
agtttaagctgtcaccatttgtttcagcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggatt |
9999321 |
T |
|
| Q |
414 |
ctcctcgtagcataccttggttcctttgtcaactgcgttttttatagcactcagaattggagtac |
478 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9999320 |
ctcctcgtagaataccttggtttctttgtcgactgcgttttttatagcactcagaattggagtac |
9999256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 478
Target Start/End: Complemental strand, 10005868 - 10005404
Alignment:
| Q |
14 |
ttgtaagaccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagttt |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005868 |
ttgtaaggccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagttt |
10005769 |
T |
|
| Q |
114 |
accggtaaatccataatcaccaaacaaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10005768 |
accggtaaatccataatcaccaaacaaaacatcggcaacaccagaaccttcactaccaggaagccaagcaaccacaagtccttcaattttctcaagatat |
10005669 |
T |
|
| Q |
214 |
ggttgtataacaataggtctaccggcgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgtta |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10005668 |
ggttgtataacaataggtctaccggtgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagagattgtta |
10005569 |
T |
|
| Q |
314 |
agtttaagctgtcaccatttgtttcagcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtccaatgaaggatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
10005568 |
agtttaagctgtcaccatttgtttcagcatatggtgtctctccaactaccacaattgcatatgaaaaatcattgaattttacataatctaatgaaggatt |
10005469 |
T |
|
| Q |
414 |
ctcctcgtagcataccttggttcctttgtcaactgcgttttttatagcactcagaattggagtac |
478 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
10005468 |
ctcctcgtagactaccttggtttctttgtcgactgcgtgttttatagcactcagaattggggtac |
10005404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 25 - 472
Target Start/End: Complemental strand, 9992754 - 9992307
Alignment:
| Q |
25 |
aatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||| |
|
|
| T |
9992754 |
aatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtcctagcaagcttaccagtaaatc |
9992655 |
T |
|
| Q |
125 |
cataatcaccaaacaaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataac |
224 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| || ||||| |||||||| | ||||||||||||||| | |
|
|
| T |
9992654 |
cataatcaccaaacaaaacatcagcaacaccagtaccttcactaccaggaagccaagcagcaacgagtccgtcaattttgttaagatatggttgtatggc |
9992555 |
T |
|
| Q |
225 |
aataggtctaccggcgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctg |
324 |
Q |
| |
|
|| ||||||||| | || ||||||||||||||||||||||| || ||||||||||| ||| ||||| ||| | || |||||||||||||| |||||| |
|
|
| T |
9992554 |
aacaggtctaccagtgactaacacaacgacacatttcactctgccgcatacattgtttattgtttctgttccgttaccggaaattgttaagttcaagctg |
9992455 |
T |
|
| Q |
325 |
tcaccatttgtttcagcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtccaatgaaggattctcctcgtagc |
424 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||||| | ||||||||||||||| ||| |
|
|
| T |
9992454 |
tcgccatttgtttcagcgtatggtgtctctccaactaccacgactgcatacgaaaaatcattggattttacgtagtctagtgaaggattctcctcataga |
9992355 |
T |
|
| Q |
425 |
ataccttggttcctttgtcaactgcgttttttatagcactcagaattg |
472 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9992354 |
ctaccttggtttctttgtcaactgtgttttttatagcactcagaattg |
9992307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 478
Target Start/End: Complemental strand, 10014209 - 10013745
Alignment:
| Q |
14 |
ttgtaagaccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagttt |
113 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
10014209 |
ttgtaagaccaaacccaaacggaaacaaaggatcataatgacgatccccaacattcatcggtaactgatggacagtcttaaaccatgtccttgaaagctt |
10014110 |
T |
|
| Q |
114 |
accggtaaatccataatcaccaaacaaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatat |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | || || ||||| ||||| || | |||| || |
|
|
| T |
10014109 |
accagtaaatccataatcaccaaacaaaacatcagcaacaccagtaccttcactaccaggaagccaagccgcaacgagtccgtcaatgttgtgaagaaat |
10014010 |
T |
|
| Q |
214 |
ggttgtataacaataggtctaccggcgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgtta |
313 |
Q |
| |
|
||||||||||||| |||||| || | |||||| ||||| |||||||||||| ||| ||||||||| | || ||||| ||||||| ||| || ||| | |
|
|
| T |
10014009 |
ggttgtataacaacaggtcttccagagattaagacaacaacacatttcactgcgccgcatacatttttgattgtttctattccatgtgcaggaagtgtca |
10013910 |
T |
|
| Q |
314 |
agtttaagctgtcaccatttgtttcagcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtccaatgaaggatt |
413 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||| | |
|
|
| T |
10013909 |
aatttaagctgtcaccatctgtttcagcatatggtttctctccaactaccacaattgcatatgaaaaaccattggattttacatagtcttgagtaggttg |
10013810 |
T |
|
| Q |
414 |
ctcctcgtagcataccttggttcctttgtcaactgcgttttttatagcactcagaattggagtac |
478 |
Q |
| |
|
||| | ||| |||| |||| |||||||||||| |||||| |||||| ||||||||| ||||| |
|
|
| T |
10013809 |
ctctttgtattctaccacggtttctttgtcaactgtgtttttaatagcattcagaattgtagtac |
10013745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 33353209 - 33353383
Alignment:
| Q |
16 |
gtaagaccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttac |
115 |
Q |
| |
|
||||| ||||| |||||||| || | || |||||||||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || | |
|
|
| T |
33353209 |
gtaaggccaaacccaaatgggaaaacggggtcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttc |
33353308 |
T |
|
| Q |
116 |
cggtaaatccataatcaccaaacaaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaa |
190 |
Q |
| |
|
| || || |||||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
33353309 |
ctgtgaaaccataatcaccaaataaaacatcagccacaccttgtccttcactacctggtagccaaccagcaacaa |
33353383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 35994459 - 35994277
Alignment:
| Q |
21 |
accaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggta |
120 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| |||||||||||||| | ||| || || ||||| ||||||||||||| ||||| || || |
|
|
| T |
35994459 |
accaaatccaaatggaaatagaggatcataatgtttatcgccaacattcattggaagctggtctactgtcttgaaccatgtccttgccagtttgccagtg |
35994360 |
T |
|
| Q |
121 |
aatccataatcaccaaacaaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaatttt |
203 |
Q |
| |
|
||| || | |||||| | | ||| || |||||||| |||||| | ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
35994359 |
aattcaaagtcaccatagagaacgtcggcaacaccttggccttcagtgccaggaagccatgcagccacaagtgcatcaatttt |
35994277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 11244300 - 11244412
Alignment:
| Q |
43 |
ggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaa |
142 |
Q |
| |
|
||||| || |||| ||| |||||||||||||| | ||||| |||| || ||||||||||||| ||||||||| || || ||||| |||||||| | || |
|
|
| T |
11244300 |
ggatcgtagtgaggatctccaacattcattgggagttgatcgacagatttgaaccatgtccttgcaagtttaccagtgaaaccatagtcaccaaaaagaa |
11244399 |
T |
|
| Q |
143 |
catccgcaacacc |
155 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
11244400 |
catctgccacacc |
11244412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University