View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_14 (Length: 474)
Name: NF5999_low_14
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Complemental strand, 36176869 - 36176425
Alignment:
| Q |
15 |
gaacaattgtacataaattttaaagcggtgtgtaaacactttaagtagtttaggttcggtttgtcccatcaatttataccaatcgaatgcatatgagtaa |
114 |
Q |
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| T |
36176869 |
gaacaattgtacataaattttaaagcggtgtgtaaacactttaagtagtttaggttcggtttgtcccatcaatttatatcaatcgaatgcatatgagtaa |
36176770 |
T |
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| Q |
115 |
actgatgaatttccttcataatactttcaaattttgatgtaacttgcacattcaaatcaagcatattgtttatgacaaagttttgactaacnnnnnnnnn |
214 |
Q |
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| T |
36176769 |
actgatgaatttccttcataatactttcaaattttgatgtaacttgcacattcaaatcaagcatattgtttatgacaaagttttgactaacaaaaaaaaa |
36176670 |
T |
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| Q |
215 |
--catgattttcatgttatattttctgcccatagaatgactatttttaaagaaatttatgtcatttgataaaagaaaaacaattcttaaaaattttcctc |
312 |
Q |
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| T |
36176669 |
aacatgattttcatgttatattttctgcccatagaatgactatttttaaagaaatttatgtcatttgataaaagaaaaacaattcttcaaaattttccac |
36176570 |
T |
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| Q |
313 |
tttatcggacacaattgttacattacttcaatagtgaagcaaatatatcatttcattgaaatgtctctatttaaccactgaaaattttcaaatttatatt |
412 |
Q |
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| T |
36176569 |
tttatcagacacaatagttacattacttcaatagtgaagcaaatatatcatttcattgaaatgtctctatttaaccactaaaaaatttcaaatttatatt |
36176470 |
T |
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| Q |
413 |
ttgaaatttctctcgcaaccattcttgtaagtcaatgagaatttt |
457 |
Q |
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| T |
36176469 |
ttgaatttcctctggcaaccattcttgtaagtcaatgagaatttt |
36176425 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 12634345 - 12634254
Alignment:
| Q |
320 |
gacacaattgttacattacttcaatagtgaagcaaatatatcatttcattgaaatgtctctatttaaccactgaaaattttcaaatttatattt |
413 |
Q |
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|||||||| |||||||| |||||||||| || || |||||| ||||||| ||| |||||||||||| || || || ||||||||||||||||| |
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| T |
12634345 |
gacacaatggttacattgcttcaatagtcaaacat-tatatcctttcattaaaa-gtctctatttaatcattgcaatttttcaaatttatattt |
12634254 |
T |
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