View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_15 (Length: 458)
Name: NF5999_low_15
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 42393021 - 42393450
Alignment:
| Q |
19 |
aaacagtgtatatagtatatgtatgcatctaaatttattatgtattgtgagttttttaaataacatctggagatggttccaaaattaacatttggaatga |
118 |
Q |
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| T |
42393021 |
aaacagtgtgtatagtatatgtatgcatctaaatttattatgtattgtgagttttttaaataacatctggagatggttccaaaattaacatttggaatga |
42393120 |
T |
|
| Q |
119 |
tccttagattcgccataccctcaccttctcgggttgacagtacacagtctgatgtcttctgatcttctctcttggaacaatgacacgaggagtgctagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393121 |
tccttagattcgccataccctcaccttctcgggttgacagtacacagtctgatgtcttctgatcttctctcttggaacaatgacacgaggagtgctagtt |
42393220 |
T |
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| Q |
219 |
ttaatacttttgatgctgatgcaatttttcaaatgccgctttttagcagagatatcatggactgtcgtatctggaatgtgtcaagtgatggaaaattttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42393221 |
ttaatacttttgatgctgatgcaatttttcaaatgcctctttttagcagagatatcatggactgtcgtatctggaatgtgtcaagtgatggaaaatattc |
42393320 |
T |
|
| Q |
319 |
tgtcaagtcttcatacagcttacgtatgaagctaattgctaattgttgaacctgctcatgaattcattcaacgcaattggagtgtaatttggaaactgca |
418 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393321 |
tgtcaagtcttcatacagcttacgtatgaggctaattgctaattgttgaacctgctcgtgaattcattcaacgcaattggagtgtaatttggaaactgca |
42393420 |
T |
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| Q |
419 |
tattcctacatgcgtccgccccttcctatg |
448 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42393421 |
tattcctacatgcgtccgccccttcctatg |
42393450 |
T |
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