View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_16 (Length: 455)
Name: NF5999_low_16
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 39750523 - 39750942
Alignment:
| Q |
17 |
ataagagacacaagacaagtatcatcactaactaagaaattaattttaattggttgaacaacactcgcgatcactaattaactttgcaataatttatttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39750523 |
ataagagacacaagacaagtatcatcactaactaagaaattaattttaattggttgaacaacactcgcgatcactaattaactttgcaataatttatttt |
39750622 |
T |
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| Q |
117 |
acattgaaacatgtgtg-ttttcgacacagacatgacaccgacgtatgtgattatgtctattattcaagtccggacacggcataacaccaacatacacgt |
215 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39750623 |
acattgaaacatgtgtggttttcgacacagacatgacaccgacgtatgtgattatgtctattattcaagtccggacacgacataacaccaacatacacgt |
39750722 |
T |
|
| Q |
216 |
ggttgcgtctgtcaacttggtttttgtcatagtgtttcatagtttattacgttggtaagagattaaattaaactagaaaaataagtacaaatgaagagaa |
315 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39750723 |
ggttgcgtccgtcaacttggtttctgtcatagtgtttcatagtttattacgttggtaagagattaaattaaactagaaaaataagtacaaatgaagagaa |
39750822 |
T |
|
| Q |
316 |
taactgctaaaagtaattcacaacatcccacaggtttaaaccattgattcaaacaacatataccggtggtagaagaagacacaaacgaagaaaccaacca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39750823 |
taactgctaaaagtaattcacaacatcccacaggtttaaaccattgattcaaacaacatataccggtggtagaagaagacacaaacgaagaaaccaacca |
39750922 |
T |
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| Q |
416 |
cgaggacagttgctgcgaag |
435 |
Q |
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||||||||||| ||| |||| |
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| T |
39750923 |
cgaggacagttactgtgaag |
39750942 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 1960848 - 1960890
Alignment:
| Q |
17 |
ataagagacacaagacaagtatcatcactaactaagaaattaa |
59 |
Q |
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||||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
1960848 |
ataagagacacgagacaagtatcatgactaactaataaattaa |
1960890 |
T |
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