View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_17 (Length: 444)
Name: NF5999_low_17
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 54100901 - 54100486
Alignment:
| Q |
19 |
caaccctagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatggtggccgactatttta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54100901 |
caaccctagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatggtggccggctatttta |
54100802 |
T |
|
| Q |
119 |
caagaattttaaatctca---------tgaaaacaatgatgtcgagtataacagtgacgcatcttttccatcaattagtatcaaggctacccttaaggat |
209 |
Q |
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| T |
54100801 |
caagaattttaaatctcacgaatctcatgaaaacaatgatgtcgagtataacagtgacgcatcttttccatcaattagtatcaaggctacccttaaggat |
54100702 |
T |
|
| Q |
210 |
gtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgggaacactttcaagaggcaagaaaaagcacatttgtacaaaagct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54100701 |
gtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgggaacactttcaagaggcaagaaaaagcacatttgtacaaaagct |
54100602 |
T |
|
| Q |
310 |
acagaaattaaacttacataacttcacaatatttagacacgataaatgtgtggcaaacaaatgggtaggatccaattccaaattcaaaccaaggatatca |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54100601 |
acagaaattaaacttacataacttcacaatatttagacacgataaatgtgtggcaaacaaaggggtaggatccaattccaaattcaaaccaaggatatca |
54100502 |
T |
|
| Q |
410 |
tgtatgctttctcaac |
425 |
Q |
| |
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|||||||||||||||| |
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| T |
54100501 |
tgtatgctttctcaac |
54100486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 54100478 - 54100046
Alignment:
| Q |
19 |
caaccctagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatggtggccgactatttta |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
54100478 |
caaccatagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaagagaactaagggaaggtggccgactatttta |
54100379 |
T |
|
| Q |
119 |
caagaattttaaatctca---------tgaaaacaatgatgtcgagtataacagtgacgcatcttttccatcaattagtatcaaggctacccttaaggat |
209 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
54100378 |
caagaattttaaatctcacgaatctcatgaaaataatgatgtcgagtataa--gtgacacatcttttccatcaattagtaacaaggatacacttaaggat |
54100281 |
T |
|
| Q |
210 |
gtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgggaacactttcaagaggcaagaaaaagcacatttgtacaaaagct |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
54100280 |
gtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgtgaacactttcaagagacaagaaaacagacatttgtacaaaagct |
54100181 |
T |
|
| Q |
310 |
acagaaattaaacttacat--aacttcacaatatttagacacgataaatgtgtggcaaacaa---------atgggtaggatccaattccaaattcaaac |
398 |
Q |
| |
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||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
54100180 |
acaaaaattaaacttacataaaacttcacaagatttagacatgataaatgtgtggcaaacaaaggggtaggaagggtaggatccaattccaaattcaaat |
54100081 |
T |
|
| Q |
399 |
caaggatatcatgtatgctttctcaacacaggttc |
433 |
Q |
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||||||||||| ||||||||||||||| ||||||| |
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| T |
54100080 |
caaggatatcacgtatgctttctcaacgcaggttc |
54100046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 88 - 425
Target Start/End: Complemental strand, 54101257 - 54100909
Alignment:
| Q |
88 |
gagaattaagggatggtggccgactattttacaagaattttaaatctca---------tgaaaacaatgatgtcgagtataacagtgacgcatcttttcc |
178 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |
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| T |
54101257 |
gagaattaagggaaggtggtcgactattttacaagaattttaaatctcacgaatctgatgaaaacaatgatgtcgagtataatagtgacgcgtcttttcc |
54101158 |
T |
|
| Q |
179 |
atcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacagtcatgtctttgtggcgtacatttgggaacactttcaag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
54101157 |
atcaattagtatcaaggctacccttaaggatgtgtcttcacaatgaagagtgttcctaacggtcatgtctttgtgacgtacatttgggaacactttcaag |
54101058 |
T |
|
| Q |
279 |
aggcaagaaaaagcacatttgtacaaaagctacagaaattaaacttacat--aacttcacaatatttagacacgataaatgtgtggcaaacaaatgggta |
376 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||||| ||||| |
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| T |
54101057 |
aggcaagaaaacgcacatttgtacaaaagctacagaaattaaactgacataaaacttcacaagatttagacacgacaaatgtgtggcaaacaaaggggta |
54100958 |
T |
|
| Q |
377 |
ggatccaattccaaattcaaaccaaggatatcatgtatgctttctcaac |
425 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54100957 |
ggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaac |
54100909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 54100046 - 54099979
Alignment:
| Q |
19 |
caaccctagtactagaaggttggaagggtgtgggttcaaaccaacatgttagacataaatgagggtgaa |
87 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54100046 |
caaccctagtact-gaaggttggaagggtgtgggttcaaaccaacatattagacataaatgagggtgaa |
54099979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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