View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_2 (Length: 671)
Name: NF5999_low_2
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_2 |
 | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 380 - 657
Target Start/End: Complemental strand, 22901705 - 22901425
Alignment:
| Q |
380 |
aaaattaggtatcccagcacggtccctaa-agaaatcccccc--aacaaacttgggcataatatcccaccaaacaaaatcagtaacaacatgtccttgac |
476 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| | |||||||||| ||||| || |||||||||| ||||| |||| | ||||||||| | ||| | |||| |
|
|
| T |
22901705 |
aaaattacgtaacccagtacggtccctaagaaaaatcccccccgaacaagctcgggcataataacccactaaaccacatcagtaactaaatgatcgtgac |
22901606 |
T |
|
| Q |
477 |
tagcaagcttgcctgcacaaccatttccttcacgaaagatgtgagaggaaagcacctgaataccatgagaaaaacagttttgccaacgattccgccacca |
576 |
Q |
| |
|
| | ||||||| | | |||||||||||||| | |||||||||||||||| |||||| || ||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
22901605 |
tggaaagcttgtccgtgcaaccatttccttcgcagaagatgtgagaggaaaacacctgcatgccaagagaaaaacagttgtgccaacggttccgccaccg |
22901506 |
T |
|
| Q |
577 |
aatagaaatcagagaggacttggaaaaagctaaaaggtcactagtagaatcaccctcaatccaaataaaccttcaatgatg |
657 |
Q |
| |
|
||||| ||||| ||| ||| |||||||||| ||||| |||||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
22901505 |
aataggaatcaaagaagacatggaaaaagcaaaaagagcactagtagagtcaccctcaatccaaagaaacctccaatgatg |
22901425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 28668890 - 28668786
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||| || |||| |||||||||| | |||||||| ||| | ||||||||| |||||| ||| | |
|
|
| T |
28668890 |
aatcaagaatgaggaagacatcaaagagccattggacaacccgactaggtcggcaccttctgggaactcaaattcttcgccgctcacccatataatattt |
28668791 |
T |
|
| Q |
290 |
atata |
294 |
Q |
| |
|
||||| |
|
|
| T |
28668790 |
atata |
28668786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 26716883 - 26716970
Alignment:
| Q |
19 |
gttatcagttggaaaataactaaatataaaactgtatgataaatagaaattatataaatttcatgaatagcccatgtacaatcctttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26716883 |
gttatcagttggaaaataactaaatataaaactgtatgataaatagaaattatataaatttcatgaatagcccatgtacaatcctttc |
26716970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 26717047 - 26717150
Alignment:
| Q |
188 |
taaatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26717047 |
taaatcaagagtgaggaagacatcaaggagctgctggacattccaactatg-cggcatctccagggaactccaatcatatgccgctcactcatatattat |
26717145 |
T |
|
| Q |
288 |
atata |
292 |
Q |
| |
|
||||| |
|
|
| T |
26717146 |
atata |
26717150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 190 - 355
Target Start/End: Original strand, 26796464 - 26796618
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||| |||||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
26796464 |
aatcaagagtgaggaagacatcaaggagccgttggacatcccaactaggtcggtacc-ccagggaactccaatcctatgccactcactcatataatatat |
26796562 |
T |
|
| Q |
290 |
atatagaaagaaagaaagnnnnnnnnnttaattgtacaagagggggccaaaccaaaccctcaaaag |
355 |
Q |
| |
|
||| | ||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26796563 |
atagaaaaaaaaaggaaaa----------aattgtacaagagggggccaaaccaaaccctcaaaag |
26796618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 371 - 487
Target Start/End: Original strand, 26796651 - 26796765
Alignment:
| Q |
371 |
tggaaagcgaaaattaggtatcccagcacggtccctaaagaaatcccccc-aacaaacttgggcataatatcccaccaaacaaaatcagtaacaacatgt |
469 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||| ||||| || |||| |
|
|
| T |
26796651 |
tggaaagcgaaaattaggcaacccattacggtccctaaagaaatccccccgaacaaactcgggcataatatcccac--aaaaaaat-agtaaaaatatgt |
26796747 |
T |
|
| Q |
470 |
ccttgactagcaagcttg |
487 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
26796748 |
ctgtgactagcaagcttg |
26796765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 639
Target Start/End: Original strand, 20718485 - 20718650
Alignment:
| Q |
473 |
tgactagcaagcttgcctgcacaaccatttccttcacgaaagatgtgagaggaaagcacctgaataccatgagaaaaacagttttgccaacgattccgcc |
572 |
Q |
| |
|
||||||||||| || |||| |||||| | |||||| || || |||| ||| |||||||| | ||||||||| ||||| || | |||||| ||||||| |
|
|
| T |
20718485 |
tgactagcaagtttatctgcgcaaccaatcccttcatagaaaatatgagtggagagcacctgcaaaccatgagataaacaattgtaccaacggttccgcc |
20718584 |
T |
|
| Q |
573 |
accaaatagaaatcagagaggacttggaaaaagctaaaaggtcactagtagaatcaccctcaatcca |
639 |
Q |
| |
|
||| || || ||||||||||| |||||||||||| || | | |||| ||| || ||||||||||||| |
|
|
| T |
20718585 |
accgaagaggaatcagagagggcttggaaaaagccaataaggcacttgta-aagcaccctcaatcca |
20718650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 23671044 - 23671003
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattcc |
231 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
23671044 |
aatcaagagtgaagaagacatcaagaaattgttggacattcc |
23671003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 372 - 487
Target Start/End: Complemental strand, 26171932 - 26171815
Alignment:
| Q |
372 |
ggaaagcgaaaattaggtatcccagcacggtccctaaagaaatcccccc--aacaaacttgggcataatatcccaccaaacaaaatcagtaacaacatgt |
469 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26171932 |
ggaaagcgaaaattaggtaacccatcacggtccctaaagaaatcccccccaaacaaactcgggcataatatcccaccaaacaaaatcagtaacaaaatgt |
26171833 |
T |
|
| Q |
470 |
ccttgactagcaagcttg |
487 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
26171832 |
ctgtgactagcaagcttg |
26171815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 37947185 - 37947293
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||| |||| | |||| | ||| |||||| |||||||||||| |
|
|
| T |
37947185 |
aatcaagagtgaggaagacatcaaggagccgttgaacattccgactaggtcggcacctccaaagaacactaatcctctgctgctcacccatatattatat |
37947284 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
| ||||||| |
|
|
| T |
37947285 |
aaatagaaa |
37947293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 12731985 - 12732093
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||||| || |||| ||||||||| |||||| ||| ||||| | |||| ||||| |||||||||||| |
|
|
| T |
12731985 |
aatcaagagtgaggaaaacatcaatgaactgctggacatcccgactaggtcggcacccccaggggacttcaatcctctgccactcacccatatattatat |
12732084 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
||||||||| |
|
|
| T |
12732085 |
atatagaaa |
12732093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 26172099 - 26172009
Alignment:
| Q |
202 |
ggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatatata |
292 |
Q |
| |
|
||||||||| |||||| | ||||||| || |||| ||||||||| | || |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
26172099 |
ggaagacattaaggagccgctggacatcccgactaggtcggcacccctagagaactcaaatcttatgccgctcactcatatattatatata |
26172009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 642
Target Start/End: Original strand, 12246969 - 12247075
Alignment:
| Q |
536 |
ataccatgagaaaaacagttttgccaacgattccgccaccaaatagaaatcagagaggacttggaaaaagctaaaaggtcactagtagaatcaccctcaa |
635 |
Q |
| |
|
||||||||||| || || || |||||||| || ||||||| |||| ||||||||||| ||| || ||||| |||||| |||||||||| |||||||| |
|
|
| T |
12246969 |
ataccatgagacaagcaattgtgccaacggtttcgccaccgaataagaatcagagagggcttagagaaagccaaaagggcactagtagagtcaccctctg |
12247068 |
T |
|
| Q |
636 |
tccaaat |
642 |
Q |
| |
|
||||||| |
|
|
| T |
12247069 |
tccaaat |
12247075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 19792102 - 19791999
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || || |||| ||||||||| || ||||| |||| | |||| |||||||||| | ||||| |
|
|
| T |
19792102 |
aatcaagagtgaggaagacatcaaggagctgttgagtatcccgactaggtcggcaccctcaaagaacttcaattctctgccactcactcataaaatatat |
19792003 |
T |
|
| Q |
290 |
atat |
293 |
Q |
| |
|
|||| |
|
|
| T |
19792002 |
atat |
19791999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 487
Target Start/End: Original strand, 16224784 - 16224898
Alignment:
| Q |
374 |
aaagcgaaaattaggtatcccagcacggtccctaaagaaatcccccc-aacaaacttgggcataatatcccaccaaacaaaatcagtaacaacatgtcct |
472 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16224784 |
aaagagaaaattaggtaacccatcacggtccctaaagaaatccccccgaacaaactcgggcctaatatcccaccaaacaaaaccagtaacaacatgtccg |
16224883 |
T |
|
| Q |
473 |
tgactagcaagcttg |
487 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16224884 |
tgactagcaagcttg |
16224898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 16224640 - 16224742
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||| | |||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16224640 |
aatcaagagtcaggaagacatcaaggagccgctggacatctcgactaggtcggcacccccagagaactccaatcctatgccgctcactcatatattatat |
16224739 |
T |
|
| Q |
290 |
ata |
292 |
Q |
| |
|
||| |
|
|
| T |
16224740 |
ata |
16224742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 4609338 - 4609446
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| || |||| |||| | |||||||| |||| ||||| | ||||||| || ||||||||||| |
|
|
| T |
4609338 |
aatcaagagtgaggaagacatcaaggaaccgctggacatgccgactaggtcgactcctccaggaaacttcaatcctctgccgcttacctatatattatat |
4609437 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
| ||||||| |
|
|
| T |
4609438 |
aaatagaaa |
4609446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 4609518 - 4609587
Alignment:
| Q |
380 |
aaaattaggtatcccagcacggtccctaaagaaatcccccc--aacaaacttgggcataatatcccacca |
447 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
4609518 |
aaaattaggtaaccctgaccggtccctaaagaaatcccccccgaacaaactcgggcataatgtcccacca |
4609587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 500
Target Start/End: Complemental strand, 638111 - 637980
Alignment:
| Q |
370 |
atggaaagcgaaaattaggtatcccagcacggtccctaaagaaatcccccc-aacaaacttgggcataatatcccaccaaacaaaatcagtaacaacatg |
468 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||| || || || ||| |
|
|
| T |
638111 |
atggaaagcgaaaattaggtaacccattacggtccctaaagaaatccccccgaacaaactcgggcataatatcccacaaaaaaaaaatagcaaaaatatg |
638012 |
T |
|
| Q |
469 |
tccttgactagcaagcttgcctgcacaaccat |
500 |
Q |
| |
|
|| ||||||||||||||| | |||||||||| |
|
|
| T |
638011 |
tctgtgactagcaagcttgtccgcacaaccat |
637980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 19487939 - 19488043
Alignment:
| Q |
194 |
aagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatatatat |
293 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| || | || ||||||||||| | ||||||| |||| | |||||||||| |||||||||||||||| |
|
|
| T |
19487939 |
aagagtgaggaagacatcaaggagtcgctggacatcccgattaggtcggcacctctaaggaactctaatcctctgccgctcacccatatattatatatat |
19488038 |
T |
|
| Q |
294 |
agaaa |
298 |
Q |
| |
|
||||| |
|
|
| T |
19488039 |
agaaa |
19488043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 638300 - 638198
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |||| || ||||| ||| |||||||||||||||| ||| || |||||||||||| ||||| |
|
|
| T |
638300 |
aatcaagagtgaggaagacatcaaggagccgctggacatcccaattaggtcggtacccccagggaactccaatcctataccactcactcatataatatat |
638201 |
T |
|
| Q |
290 |
ata |
292 |
Q |
| |
|
||| |
|
|
| T |
638200 |
ata |
638198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 14784186 - 14784078
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| || |||| ||||| ||| |||| ||||||||||| | | |||| ||| |||||||||||| |
|
|
| T |
14784186 |
aatcaagagtgaggaagacatcaaggagccgctggacatcccgactaggtcggaacccccagagaactccaatcctctaccgcccacccatatattatat |
14784087 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
||||||||| |
|
|
| T |
14784086 |
atatagaaa |
14784078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 49087537 - 49087460
Alignment:
| Q |
372 |
ggaaagcgaaaattaggtatcccagcacggtccctaaagaaatccccc-caacaaacttgggcataatatcccaccaaa |
449 |
Q |
| |
|
||||| ||||||||||||| | | | |||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
49087537 |
ggaaaacgaaaattaggtacctc-gtacggtccctaaagaaatccccctgaacaaactcgggcataatgtcccaccaaa |
49087460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 447
Target Start/End: Complemental strand, 23928701 - 23928626
Alignment:
| Q |
372 |
ggaaagcgaaaattaggtatcccagcacggtccctaaagaaatccccccaacaaacttgggcataatatcccacca |
447 |
Q |
| |
|
||||| ||||||||||||| ||| || |||||||||||||||||| |||||||| ||||||| | |||||||| |
|
|
| T |
23928701 |
ggaaaacgaaaattaggtaaccccagtcgatccctaaagaaatcccccgaacaaactcgggcatattgtcccacca |
23928626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 49087721 - 49087620
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| || |||| || || ||| |||||||||| ||||| | | | |||||| |||||| ||||| |
|
|
| T |
49087721 |
aatcaagagtgaggaagacatcaaagagccgctggacatcccgactaggttgggacc-ccagggaacttcaatcctcttcagctcacccatataatatat |
49087623 |
T |
|
| Q |
290 |
ata |
292 |
Q |
| |
|
||| |
|
|
| T |
49087622 |
ata |
49087620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 17258608 - 17258501
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || | || ||||||||| | ||||| |||||||| | | |||||||||||| |||||||| |
|
|
| T |
17258608 |
aatcaagagtgaggaagacatcaaggagtcgttggacatcccgaataggtcggcacc-ctagggagctccaatcctctcccgctcactcatgtattatat |
17258510 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
||||||||| |
|
|
| T |
17258509 |
atatagaaa |
17258501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 36471789 - 36471682
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| || | ||||||| |||||||||| |||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
36471789 |
aatcaagagtgag-aagacatcaaggagccgttgaacgtcccaactaggtcggcacctttagggaactccaatcatctgccgttcacccatatattatat |
36471691 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
||| ||||| |
|
|
| T |
36471690 |
atagagaaa |
36471682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 322 - 449
Target Start/End: Complemental strand, 10183171 - 10183044
Alignment:
| Q |
322 |
tgtacaagaggggg-ccaaaccaaaccctcaaaagtgaacnnnnnnnttatggaaagcgaaaattaggtatcccagcacggtccctaaagaaatcccccc |
420 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||| ||||| || |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10183171 |
tgtacaagaggggggccaaaccaaaccctcaaaagaaaacgaaaa--ttacggaaaacgcaaattaggtaaccctatacggtccctaaagaaatcccccc |
10183074 |
T |
|
| Q |
421 |
-aacaaacttgggcataatatcccaccaaa |
449 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |
|
|
| T |
10183073 |
gaacaaactcgggcataatgtcccaccaaa |
10183044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 16175799 - 16175910
Alignment:
| Q |
187 |
ttaaatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatatta |
286 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | | ||||| || |||| ||||||| | ||||||| |||||||| | ||| |||| |||| ||||| |
|
|
| T |
16175799 |
ttaaatcaagagtgaggaagacataaaggagtagctagacatcccgactaggtcggcaaccccagggagctccaatcctctgctactcagtcatgtatta |
16175898 |
T |
|
| Q |
287 |
tatatatagaaa |
298 |
Q |
| |
|
||||||||||| |
|
|
| T |
16175899 |
aatatatagaaa |
16175910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 188 - 294
Target Start/End: Original strand, 25434870 - 25434976
Alignment:
| Q |
188 |
taaatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattat |
287 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||||| | |||| |||||||||| || || ||||||||| | ||||||||||||||| | ||| |
|
|
| T |
25434870 |
taaatcaagagtcaggaacacatcaaggagctgttggacatctcgactaggtcggcaccttcaagggactccaatcctctgccgctcactcatagaatat |
25434969 |
T |
|
| Q |
288 |
atatata |
294 |
Q |
| |
|
||||||| |
|
|
| T |
25434970 |
atatata |
25434976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 16592219 - 16592283
Alignment:
| Q |
238 |
gtcggcacctccagggaactccaatcatatgccgctcactcatatattatatatatagaaagaaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
16592219 |
gtcggcacctccagggaactccaatcctatgccggtcac-catatattatatatatagaaaaaaag |
16592283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 17707608 - 17707508
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
||||||||||||| ||||||||||||||| | | ||||| ||||||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
17707608 |
aatcaagagtgagcaagacatcaaggagtcgctagacatcccaactacgtcggcatcctcagggaacttcaatctgctgccgctcatccatatattatat |
17707509 |
T |
|
| Q |
290 |
a |
290 |
Q |
| |
|
| |
|
|
| T |
17707508 |
a |
17707508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 29455097 - 29455198
Alignment:
| Q |
370 |
atggaaagcgaaaattaggtatcccagcacggtccctaaagaaatcccc--ccaacaaacttgggcataatatcccaccaaacaaaatcagtaacaacat |
467 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||||| | | |||||| ||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
29455097 |
atggaaagcgaaaattaggtaactcatcacggtccctaaagaaatccccctcgagcaaactcaggcataaaatcccaccaa--gaaaacagtaacaacat |
29455194 |
T |
|
| Q |
468 |
gtcc |
471 |
Q |
| |
|
|||| |
|
|
| T |
29455195 |
gtcc |
29455198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 22795326 - 22795257
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactcc |
259 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||| || |||| |||||||| |||||||||||| |
|
|
| T |
22795326 |
aatcaagagtgaggatgacatcaaggagccgctggacatcccgactaggtcggcacacccagggaactcc |
22795257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 645
Target Start/End: Complemental strand, 17810990 - 17810859
Alignment:
| Q |
513 |
agatgtgagaggaaagcacctgaataccatgagaaaaacagttttgccaacgattccgccaccaaatagaaatcagagaggacttggaaaaagctaaaag |
612 |
Q |
| |
|
||||||||||||||| |||||||| ||| || | || || || |||||||||||||| ||| || ||| || || | ||| ||| |||||||| ||||| |
|
|
| T |
17810990 |
agatgtgagaggaaaccacctgaaaaccttgcaagaagcaattgtgccaacgattccgtcacgaa-taggaaccataaagggcttagaaaaagccaaaag |
17810892 |
T |
|
| Q |
613 |
gtcactagtagaatcaccctcaatccaaataaa |
645 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |
|
|
| T |
17810891 |
agcactagtagggtcaccctctatccaaataaa |
17810859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 522
Target Start/End: Complemental strand, 22502786 - 22502742
Alignment:
| Q |
478 |
agcaagcttgcctgcacaaccatttccttcacgaaagatgtgaga |
522 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
22502786 |
agcaagcttgtttgcacaaccattaccttcatgaaagatgtgaga |
22502742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 29454919 - 29455018
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||| || | || |||||||| ||||| |||||| ||| || |||||||||||||||| ||||| |
|
|
| T |
29454919 |
aatcaagagtgaggat---atcaaggagccgctggacatcccgattaggtcggcacacccaggaaactcccatcctaagccgctcactcatataatatat |
29455015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 16940 - 16841
Alignment:
| Q |
194 |
aagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatatatat |
293 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||||||| || |||||| |||||||||||||||||| || |||||||||| ||| | ||||||| |
|
|
| T |
16940 |
aagagtgaggaagacatcaaggagccgctggacatcccaactaggttggcacccccagggaactccaatcatctg-cgctcactcaaataatgtatatat |
16842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 24879 - 24775
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
||||||||||| | || ||||||||||| |||| |||| || |||| |||||||||| || || ||||||||| | ||||||||||||||| | ||||| |
|
|
| T |
24879 |
aatcaagagtgggaaacacatcaaggagccgttgaacatcccgactaggtcggcaccttcaagggactccaatcctctgccgctcactcatagaatatat |
24780 |
T |
|
| Q |
290 |
atata |
294 |
Q |
| |
|
||||| |
|
|
| T |
24779 |
atata |
24775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 639
Target Start/End: Original strand, 22322 - 22487
Alignment:
| Q |
473 |
tgactagcaagcttgcctgcacaaccatttccttcacgaaagatgtgagaggaaagcacctgaataccatgagaaaaacagttttgccaacgattccgcc |
572 |
Q |
| |
|
||||||||||| || |||| |||||| | |||||| || || |||| ||| |||||||| | ||||||||| ||||| || | |||||| ||||||| |
|
|
| T |
22322 |
tgactagcaagtttatctgcgcaaccaatcccttcatagaaaatatgagtggagagcacctgcaaaccatgagataaacaattgtaccaacggttccgcc |
22421 |
T |
|
| Q |
573 |
accaaatagaaatcagagaggacttggaaaaagctaaaaggtcactagtagaatcaccctcaatcca |
639 |
Q |
| |
|
||| || || ||||||||||| |||||||||||| || | | |||| ||| || ||||||||||||| |
|
|
| T |
22422 |
accgaagaggaatcagagagggcttggaaaaagccaataaggcacttgta-aagcaccctcaatcca |
22487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 34130 - 34238
Alignment:
| Q |
190 |
aatcaagagtgaggaagacatcaaggagttgttggacattccaactacgtcggcacctccagggaactccaatcatatgccgctcactcatatattatat |
289 |
Q |
| |
|
|||||||| ||||||| ||||||| || ||||||||| || |||| ||||||||| ||||| |||| |||| | |||| ||||| |||||||||||| |
|
|
| T |
34130 |
aatcaagattgaggaaaacatcaatgaaccgttggacatcccgactaggtcggcaccctcaggggactcaaatcctctgccactcacccatatattatat |
34229 |
T |
|
| Q |
290 |
atatagaaa |
298 |
Q |
| |
|
||| ||||| |
|
|
| T |
34230 |
ataaagaaa |
34238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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