View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_21 (Length: 388)
Name: NF5999_low_21
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 36965637 - 36965496
Alignment:
| Q |
133 |
gagatcaacaaacttatctgtcttttatgtttggtgtataatttgaaatatttcatgaaacaacagatttaatttcaagcattgaaatatttcatgaaat |
232 |
Q |
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| T |
36965637 |
gagatcaacaaacttatctgtctttgatgtttggtgtataatttgaaatatttcatgaaacaacagatttaatttcaagcattgaaatatttcatgaaat |
36965538 |
T |
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| Q |
233 |
aacaaattaatttgtgagggatagtagagtttttctctttgt |
274 |
Q |
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| T |
36965537 |
aacacattaatttgtgagggatagtagagtttttctctttgt |
36965496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 36965750 - 36965716
Alignment:
| Q |
16 |
aaaatcaggtataagaatatctaagcaaatgtacc |
50 |
Q |
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| T |
36965750 |
aaaatcaggtataagaatatctaagcaaatgtacc |
36965716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 36965500 - 36965463
Alignment:
| Q |
342 |
tttgttgagagaattaagctttgaccaaggagtattat |
379 |
Q |
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| T |
36965500 |
tttgttgagagaattaagctttgaccaagaagtgttat |
36965463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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