View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_22 (Length: 385)
Name: NF5999_low_22
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41896348 - 41895989
Alignment:
| Q |
19 |
acccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagccacttgaattatacattgcactagactcagacaaagtcataggcataaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896348 |
acccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagccacttgaattatacattgcactagactcagacaaagtcataggcataaa |
41896249 |
T |
|
| Q |
119 |
agaattcaaaccccttgatgaagaagcagttttcagaagctccatagcacttgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaattta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896248 |
agaattcaaaccccttgatgaagaagcagttttcagaagctccatagcacttgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaattta |
41896149 |
T |
|
| Q |
219 |
gatatggtgttataattatcctcagttgtttgtggtggataagctaggttaagatcttgtccttgatggatcttagggttttgagaagcagattgaggga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896148 |
gatatggtgttataattatcctcagttgtttgtggtggataagctaggttaagatcttgtccttgatggatcttagggttttgagaagcagattgaggga |
41896049 |
T |
|
| Q |
319 |
aattattttgtgctgtagcaagatcaggattaatgataatattttttgttattgatgatg |
378 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896048 |
aattattttgtgttgtagcaagatcaggattaatgataatattttttgttattgatgatg |
41895989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University