View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_23 (Length: 382)
Name: NF5999_low_23
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 120 - 379
Target Start/End: Complemental strand, 33967196 - 33966937
Alignment:
| Q |
120 |
gtttagagttttaatcttattgcagttctatgactgaattcgaaaccaaaacctacgattacgcgcattttggaaacataactagtatatataaaccaaa |
219 |
Q |
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| T |
33967196 |
gtttagagttttaatcttattgcagttctatgactgaattcgaaaccaaaacctatgattacgcgcattttggaaacataactagtatatataaaccaaa |
33967097 |
T |
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| Q |
220 |
ctaaaacataccattctccatcattttttcattttcacaatcttctcttaagaatgtcaaacatgcattacattttcagcatgttgttatttcttcttct |
319 |
Q |
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| T |
33967096 |
ccaaaacataccattctccatcattttttcattttcacaatcttctcttaagaatgtcaaacatgcattacattttcagcatgttgttatttcttcttct |
33966997 |
T |
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| Q |
320 |
tcttgtacaaaatctgaccacaatacattgtcgtacaaaaggaattcgaacgatacgttc |
379 |
Q |
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| T |
33966996 |
tcttgtacaaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgttc |
33966937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 33967334 - 33967212
Alignment:
| Q |
15 |
accataaacattactactataatgtaacctacatatcctcagcgcacaatcacacagactaatctctcgagtcggataggaccataatatatgaccaaat |
114 |
Q |
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| T |
33967334 |
accataaacattactactataatgtaacctacatatcctcagcgcacaatcacacagactaatctctcgagttagataagaccataatatatgaccaaat |
33967235 |
T |
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| Q |
115 |
attttgtttagagttttaatctt |
137 |
Q |
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| T |
33967234 |
attttgtttagagttttaatctt |
33967212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 10413204 - 10413232
Alignment:
| Q |
70 |
agactaatctctcgagtcggataggacca |
98 |
Q |
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| T |
10413204 |
agactaatctctcgagtcggataggacca |
10413232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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