View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_25 (Length: 373)
Name: NF5999_low_25
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 130 - 367
Target Start/End: Original strand, 16330028 - 16330263
Alignment:
| Q |
130 |
ggagtgatccacctgctctgaagcattctttaaggactcgccattatagacctctactccttaaggcaatcctcatatttcttcactatactagcatata |
229 |
Q |
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| T |
16330028 |
ggagtgatccacctgctccgaagcattctttaaggactcgccattatagacctctattcct-aaggcaatcctcatattccttcactatactggcataga |
16330126 |
T |
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| Q |
230 |
ggtcctccacattcttatgagccaacatggtttcatccagagctttctcatatgcctttagagccatttgatttttcttaggaaccttctccaaatcgac |
329 |
Q |
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| T |
16330127 |
ggtcctccgcattcttatgagccagcatggtttcatccagagctttctcagatgccattagagccatttga-ttttcttagtaaccttctccaagtcgac |
16330225 |
T |
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| Q |
330 |
aactttagcatgaagattttatggatacttcatctcac |
367 |
Q |
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| T |
16330226 |
aactttagcatgaagagtttatggatacttcatctcac |
16330263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 16329470 - 16329586
Alignment:
| Q |
17 |
cacccaagtcgggccttgactcaaggactggatacatggaccccaatccaaaaaagcaagagcttagattaaagagtatgtctacaaagagaatcaagga |
116 |
Q |
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| T |
16329470 |
cacccaagtcgggccttgactcaaggactggatacatggaccccaatccaaaaaagcaagagctcaaattaaagagtatgtctgcaaagagaaccaacga |
16329569 |
T |
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| Q |
117 |
gcaagtcaacaaaggag |
133 |
Q |
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| T |
16329570 |
gcaagtcagcaaaggag |
16329586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 16339194 - 16339286
Alignment:
| Q |
22 |
aagtcgggccttgactcaaggactggatacatggaccccaatccaaaaaagcaagagcttagattaaagagtatgtctacaaagagaatcaag |
114 |
Q |
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| T |
16339194 |
aagtcgagccttaactcaaaggcgtgatacatggaccccaatccaaaaaatcaagagctcgcattaaaaagcatatctacaaagagaaccaag |
16339286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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