View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_26 (Length: 357)
Name: NF5999_low_26
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_26 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0891 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 357
Target Start/End: Complemental strand, 4507 - 4165
Alignment:
| Q |
15 |
cataggagaataacagtgatggatagttgaaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtgttggaagata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507 |
cataggagaataacagtgatggatagttggaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtgttggaagata |
4408 |
T |
|
| Q |
115 |
attttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgattaattaagtg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4407 |
attttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgattaattaagtg |
4308 |
T |
|
| Q |
215 |
ttttttccccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4307 |
ttttttccccataaaatattgcatatagtcaatcataagaacttaaaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaac |
4208 |
T |
|
| Q |
315 |
agaaatgttgcatctcaacaaaatacatagaccatactaaact |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4207 |
agaaatgttgcatctcaacaaaatacatagaccatactaaact |
4165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 350
Target Start/End: Original strand, 35774168 - 35774298
Alignment:
| Q |
222 |
cccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaacagaa--- |
318 |
Q |
| |
|
|||| |||||||||| |||||| ||| |||||||| ||| |||||| ||| || | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774168 |
cccagaaaatattgcttatagttaatattaagaactaacattaataagacctta----ttaagtggaaatagtttagctaaaagtaatagaacagaaatg |
35774263 |
T |
|
| Q |
319 |
---atgttgcatctcaacaaaatacatagaccata |
350 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |
|
|
| T |
35774264 |
tcgatgtcgcatctcaacaaaatatatagaccata |
35774298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University