View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_27 (Length: 342)
Name: NF5999_low_27
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 36810516 - 36810828
Alignment:
| Q |
11 |
ttatactccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtt |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36810516 |
ttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtt |
36810615 |
T |
|
| Q |
111 |
tttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttcttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36810616 |
tttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcatccttcttt |
36810715 |
T |
|
| Q |
211 |
gcactccttaggaactgtcctttgctcgctgagatcagaatggagtcaacaaatataggaaatggctcaagaccatcagtggatttggattcagtagtat |
310 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
36810716 |
gcactccttaggaactttcatttgctcgctgagatcagaatggagtcaacaaatataggaaatggctcaaaaccgtcagtggatttggattcagtagtat |
36810815 |
T |
|
| Q |
311 |
accatcaagtgaa |
323 |
Q |
| |
|
||||||||||||| |
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| T |
36810816 |
accatcaagtgaa |
36810828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 27005287 - 27005527
Alignment:
| Q |
32 |
attatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaa |
131 |
Q |
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||||||||||| |||| |||| ||||||||| |||| || ||| |||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| |
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| T |
27005287 |
attatacatattatggtatctattatctactatcaaggtctcgttttctacagcatctagatcttcaatttgcaacttttttgaatgatcagggtatcac |
27005386 |
T |
|
| Q |
132 |
tgagttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcct |
231 |
Q |
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||| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
27005387 |
tgacttgtctgtttatcttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcct |
27005486 |
T |
|
| Q |
232 |
ttgctcgctgagatcagaatggagtcaacaaatataggaaa |
272 |
Q |
| |
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|||||| | |||||||||||||||||| || |||| ||||| |
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| T |
27005487 |
ttgctcacagagatcagaatggagtcagcagatattggaaa |
27005527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 62 - 266
Target Start/End: Original strand, 33714403 - 33714607
Alignment:
| Q |
62 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
161 |
Q |
| |
|
||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||| | |||||||| ||| || || ||||| |||||| || |
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| T |
33714403 |
tgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgatcagcatttcaatgagctgtgtgcatttcttggtgatttagt |
33714502 |
T |
|
| Q |
162 |
gtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgctcgctgagatcagaatggagtcaaca |
261 |
Q |
| |
|
||||||||| || || |||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33714503 |
gtctataaatgtgagtggttgtgacgacctcaccaattcagccttctttgcactccttaggaactgtcctttgctcactgagatcagaatggagtcaaca |
33714602 |
T |
|
| Q |
262 |
aatat |
266 |
Q |
| |
|
||||| |
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|
| T |
33714603 |
aatat |
33714607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 266
Target Start/End: Original strand, 33708568 - 33708772
Alignment:
| Q |
62 |
tgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggt |
161 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||| ||||| |||||||||||||||||||| ||| |||||| | ||| || || ||||| |||||| || |
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|
| T |
33708568 |
tgtcaaagtgtcgatctctgcagcatctagatattcaacgtgcaaagtttttgaatgatcgtcgtttcaatgtgctgtgtgcatttcttggtgatttagt |
33708667 |
T |
|
| Q |
162 |
gtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgctcgctgagatcagaatggagtcaaca |
261 |
Q |
| |
|
||||||||| || || |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33708668 |
gtctataaatgtgagtggttgtgacaagctcaccaattcagccttctttgcactccttaggaactgtcctttgctcactgagatcagaatggagtcaaca |
33708767 |
T |
|
| Q |
262 |
aatat |
266 |
Q |
| |
|
||||| |
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|
| T |
33708768 |
aatat |
33708772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 36876157 - 36875894
Alignment:
| Q |
24 |
ttgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcag |
123 |
Q |
| |
|
||||||| ||||||||||| || |||||| | ||| ||||||||| | ||||||||| | |||||||||||||| ||||| ||||||||||||||| |
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|
| T |
36876157 |
ttgcttccattatacatattataggatctatcgtctgttgtcaaagtcttcatttctacaacatctagatcttcaagctgcaatgtttttgaatgatcat |
36876058 |
T |
|
| Q |
124 |
cgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttagga |
223 |
Q |
| |
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|||||||||||||||| || || ||||| |||||||||||||||||||||| |||||| || |||||||| || |||||||||||||||| ||||||| |
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| T |
36876057 |
cgtatcaatgagttgtgtgcatttcttggcgatttggtgtctataaacgtcaatggttgtgacaagctcaccaatgcagccttctttgcacttcttagga |
36875958 |
T |
|
| Q |
224 |
actgtcctttgctcgctgagatcagaatggagtcaacaaatataggaaatggctcaagaccatc |
287 |
Q |
| |
|
| |||||||| || ||||||| |||||||||||| | | |||| ||| ||||||||||| |
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|
| T |
36875957 |
attgtccttttctgagtgagatccatatggagtcaacacaacttggaattggttcaagaccatc |
36875894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 33397082 - 33396801
Alignment:
| Q |
45 |
tgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatg------caaagtttttgaatgatcagcgtatcaatgagttg |
138 |
Q |
| |
|
|||||||||||| || |||||| |||||||| ||| |||| ||||||||||||| || |||| | |||||||| ||| || ||| || ||| |
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|
| T |
33397082 |
tgggatctcttacctcttgtcaaggtgtcgatctctgcagcatctagatcttcaaaattttgagtcaaaatatttgaatgttcaaagtttcatggacttg |
33396983 |
T |
|
| Q |
139 |
tctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactccttaggaactgtcctttgctcg |
238 |
Q |
| |
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| ||||| ||||| ||||||||||||||||||| ||| |||||| || |||||| | || ||||||| ||||||||||||| ||| ||||||||||| |
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| T |
33396982 |
tgtgtatttcttggtgatttggtgtctataaacctcaatggttgtgacaagctcaacaatgcagccttatttgcactccttaagaattgtcctttgctga |
33396883 |
T |
|
| Q |
239 |
ctgagatcagaatggagtcaacaaatataggaaatggctcaagaccatcagtggatttggattcagtagtataccatcaagtgaa |
323 |
Q |
| |
|
|||||||| |||||||||||||| || |||| ||| ||||||||||| | || |||||| || ||||||||||||||||| |
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|
| T |
33396882 |
ctgagatccacatggagtcaacaaaaattggaattggttcaagaccatctgcgg---tggatttggttgtataccatcaagtgaa |
33396801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 37580329 - 37580570
Alignment:
| Q |
20 |
aagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatga |
119 |
Q |
| |
|
||||||||| ||| || |||||| |||||| | |||| || |||||||||||| || || ||| ||||||| ||||| | |||| |||||||||||| |
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| T |
37580329 |
aagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaatcactgaagcatctagatattcaaaaagcaacgtttttgaatga |
37580428 |
T |
|
| Q |
120 |
tcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgcactcctt |
219 |
Q |
| |
|
|| | | ||||| || ||| | | ||||| ||||||||||| ||| || || || |||||| | ||||||| ||| ||||| |||||||||||| |
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|
| T |
37580429 |
tccacttttcaataagctgtgcgcttttcttggtgatttggtgtttattaatgtgagtggttgtgaattgctcaccaattttgccttgtttgcactcctt |
37580528 |
T |
|
| Q |
220 |
aggaactgtcctttgctcgctgagatcagaatggagtcaaca |
261 |
Q |
| |
|
| |||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
37580529 |
aagaactgtcctttactcactgagatcaaaatggagtcaaca |
37580570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 33093438 - 33093684
Alignment:
| Q |
19 |
caagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatg |
118 |
Q |
| |
|
|||||||||| | | ||||||||| |||||||||||| | ||||||||||| ||||| | |||| |||| |||||||| |||||||||||||||||| |
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|
| T |
33093438 |
caagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaatgcaaagtttttgaatg |
33093537 |
T |
|
| Q |
119 |
at-----cagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctataaacgtcagcggttgttaccagctcacctattcagccttctttgca |
213 |
Q |
| |
|
|| || | ||||| ||||| | ||||||| ||||||||||||||||| ||||| |||||| || ||||||| || | |||| |||||| |
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|
| T |
33093538 |
atgatgacaactcctcaat--gttgtatccatatcttcgcgatttggtgtctataaatgtcagtggttgtaacatgctcaccaatgtaaccttgtttgca |
33093635 |
T |
|
| Q |
214 |
ctccttaggaactgtcctttgctcgctgagatcagaatggagtcaacaa |
262 |
Q |
| |
|
||| |||| | ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
33093636 |
ttccctaggcattgtcctttgcttagtgatatcagaatggagtcaacaa |
33093684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 18723873 - 18724096
Alignment:
| Q |
46 |
gggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtat |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || | |||||||||| || |||||| ||||||||| || ||| |||||||||||| ||||| |
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| T |
18723873 |
gggatctcttatctcttgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaataattgtcgtttcaatgagttgtatgtat |
18723972 |
T |
|
| Q |
146 |
atcttgctgatttggtgtctataaacgtcagcg-------gttgttaccagctcacctattcagccttctttgca-ctccttaggaactgtcctttgctc |
237 |
Q |
| |
|
||||| |||||| ||||||||||| || || | ||||| || |||||||| |||||||||| || ||| ||||||| ||| ||| ||||||| |
|
|
| T |
18723973 |
ttcttgatgatttcgtgtctataaatgtgagtggttgtgagttgtgacaagctcaccaattcagccttgttcgcacctccttaagaattgtactttgcta |
18724072 |
T |
|
| Q |
238 |
gctgagatcagaatggagtcaaca |
261 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
18724073 |
agtgagatcagaatcgagtcaaca |
18724096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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