View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_28 (Length: 338)
Name: NF5999_low_28
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_28 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 106375 - 106059
Alignment:
| Q |
10 |
ataatactacgaatcaaggatgattgctctataaacacattaaaattgtccacttcattgaaaaatagtcggtcgaaagttacaactaacaaattttacn |
109 |
Q |
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||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
106375 |
ataataccatgaatcaaggatgattgctcaataaacacatcaaaattgtccacttcattgaaaaatagtcggtcgaaaattacaactaacaaatttta-t |
106277 |
T |
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| Q |
110 |
nnnnnnnnnnncaattgatcgaaagttatgaagataattatttaacaaatttccaaattgcgaaactagtaaatctcaaccctttcattctattttggga |
209 |
Q |
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| T |
106276 |
aaacaaaaaaacaattgatcgaaaattacgaagatacttatttaacaaatttccaaattgcgaaactagtaaatctctaccctttcattctattttggga |
106177 |
T |
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| Q |
210 |
attatctaccctttcattgttagctgtcttcaatctgcatatatgtacactactacaccggtggtctgaatggaccagaacatgtgctcatcaagaagtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
106176 |
attatctaccctttcattgttagctgtcttcaatctgcatatatgtacactactacaccggtggtctgaatggaccagcacatgtgctcatgaagaagtg |
106077 |
T |
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| Q |
310 |
gagaggaaggttcatagt |
327 |
Q |
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|||||||||||||||||| |
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| T |
106076 |
gagaggaaggttcatagt |
106059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 41119451 - 41119135
Alignment:
| Q |
10 |
ataatactacgaatcaaggatgattgctctataaacacattaaaattgtccacttcattgaaaaatagtcggtcgaaagttacaactaacaaattttacn |
109 |
Q |
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| T |
41119451 |
ataataccatgaatcaaggatgattgctcaataaacacatcaaaattgtccacttcattgaaaaatagtcggtcgaaaattacaactaacaaatttta-t |
41119353 |
T |
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| Q |
110 |
nnnnnnnnnnncaattgatcgaaagttatgaagataattatttaacaaatttccaaattgcgaaactagtaaatctcaaccctttcattctattttggga |
209 |
Q |
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||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41119352 |
aaacaaaaaaacaattgatcgaaaattacgaagatacttatttaacaaatttccaaattgcgaaactagtaaatctctaccctttcattctattttggga |
41119253 |
T |
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| Q |
210 |
attatctaccctttcattgttagctgtcttcaatctgcatatatgtacactactacaccggtggtctgaatggaccagaacatgtgctcatcaagaagtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
41119252 |
attatctaccctttcattgttagctgtcttcaatctgcatatatgtacactactacaccggtggtctgaatggaccagcacatgtgctcatgaagaagtg |
41119153 |
T |
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| Q |
310 |
gagaggaaggttcatagt |
327 |
Q |
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|||||||||||||||||| |
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| T |
41119152 |
gagaggaaggttcatagt |
41119135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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