View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_29 (Length: 336)
Name: NF5999_low_29
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 33966976 - 33966641
Alignment:
| Q |
1 |
caatacattgtcatacaaaaggaattcgaccgatacgttccgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaatt |
100 |
Q |
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| T |
33966976 |
caatacattgtcatacaaaaggaattcgaccgatacgttctgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaatt |
33966877 |
T |
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| Q |
101 |
cacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaat |
200 |
Q |
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| T |
33966876 |
catgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaat |
33966777 |
T |
|
| Q |
201 |
ccttcttttggagattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttaca |
300 |
Q |
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| T |
33966776 |
ccttcttttggagattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttaca |
33966677 |
T |
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| Q |
301 |
cgtgagtagtactatactttatctcattttcctttg |
336 |
Q |
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| T |
33966676 |
cgtgagtagtactatactttatctcattttcctttg |
33966641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 43076689 - 43076909
Alignment:
| Q |
88 |
cagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
187 |
Q |
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| T |
43076689 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
43076788 |
T |
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| Q |
188 |
cgttgataagaatccttcttttgga-gattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
286 |
Q |
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| T |
43076789 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
43076887 |
T |
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| Q |
287 |
tgcaggagtttacacgtgagta |
308 |
Q |
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| T |
43076888 |
tgcaggggtttacacgtaagta |
43076909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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