View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_30 (Length: 335)
Name: NF5999_low_30
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 6360613 - 6360918
Alignment:
| Q |
20 |
gctaggaggaccaaaacagcgggataaagtctggttaatggttgctgaagggtttcctttggttccgaagtctcgtaatgatgctgttgctgaaatcact |
119 |
Q |
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| T |
6360613 |
gctaggaggaccaaaacagcgggatgaagtctggttaatggttgctgaagggtttcctttggttccgaagtctcgtagtgatgctgttgctgaaatcact |
6360712 |
T |
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| Q |
120 |
ggtaatcaagaggagatggaaaacgatcttgatgagttcatgaatgtaacaaacaatctcgatatattttaacgttgtgaatagggtacaagaactaatt |
219 |
Q |
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| T |
6360713 |
ggtaatcaagaggagatggaaaacgatcttgatgagttcatgaatgtaacaaacaatctcgatatatttcaacgttgtgaatagggtacaagaactaatt |
6360812 |
T |
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| Q |
220 |
tgtttaaataggctcttctaaagctaatgggcatgattaattaaaggaatacaattgttagaaatgattacaaatatacactatttacaacacaccattg |
319 |
Q |
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| T |
6360813 |
tgtttaaataggctcttctaaagctaatgggcatgattaattaaaggaatacaattgttagaaataattacaaatatacactatttacaacacaccattg |
6360912 |
T |
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| Q |
320 |
cctttg |
325 |
Q |
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|||||| |
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| T |
6360913 |
cctttg |
6360918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 6429860 - 6429931
Alignment:
| Q |
180 |
gatatattttaacgttgtgaatagggtacaagaactaatttgtttaaataggctcttctaaagctaatgggc |
251 |
Q |
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||||||||| || | |||||||||| ||||||||||||||| ||||||||| |||||||| | ||||||||| |
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| T |
6429860 |
gatatatttcaaagctgtgaataggatacaagaactaatttttttaaatagactcttctatacctaatgggc |
6429931 |
T |
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