View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_34 (Length: 316)
Name: NF5999_low_34
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 49688964 - 49688664
Alignment:
| Q |
1 |
gctttatattatgcttttggataaaacataaaggaaatgtgctaacatgttaattttgaagtttagtatccattcttgaattggtcaatcggctcaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49688964 |
gctttatattatgcttttggataaaacataaaggaaatgtgctaacatgttaattttgaagtttagcatccattcttgaattggtcaatcggctcaaaga |
49688865 |
T |
|
| Q |
101 |
atcactagttagaaacttgcatctatgagaactacgaagcaaaccaaaataagttacgctaaattcaaaaatgaaatcttgtagaaaactgcagagaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49688864 |
atcactagttagaaacttgcatctatgagaactacgaagcaaaccaaaataagttacgctaaattcaaaaatgaaatcttgtagaaatctgcagagaaac |
49688765 |
T |
|
| Q |
201 |
aaaattctagtgataaatgcaattataaggacacatgtttacagccaattcaaagcataaaccaaaagaaatgatgacattcttttctagtgctacatac |
300 |
Q |
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| T |
49688764 |
aaaattctagtgatcaatgcaattataaggacacatgtttacagccaattcaaagcataaaccaaaagaaatgatgacattcttttctagtgctacatac |
49688665 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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|
| T |
49688664 |
t |
49688664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 49683737 - 49683699
Alignment:
| Q |
263 |
caaaagaaatgatgacattcttttctagtgctacatact |
301 |
Q |
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| T |
49683737 |
caaaagaaatgatgacatttttttctagtgctacatact |
49683699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 49711479 - 49711438
Alignment:
| Q |
189 |
ctgcagagaaacaaaattctagtgataaatgcaattataagg |
230 |
Q |
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| T |
49711479 |
ctgcagagaaataaaattctagtgataattgcaatcataagg |
49711438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 49684475 - 49684391
Alignment:
| Q |
40 |
tgctaacatgttaattttgaagtttagtatccattcttgaattggtcaa-tcggctcaaagaatcactagttagaaacttgcatc |
123 |
Q |
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| T |
49684475 |
tgctaatatgtaaatttcgaagttcagtatccagttttgaattggtcaattcgactcaaagaattatcagtcaggaacttgcatc |
49684391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 20059557 - 20059505
Alignment:
| Q |
34 |
gaaatgtgctaacatgttaattttgaagtttagtatccattcttgaattggtc |
86 |
Q |
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||||| |||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
20059557 |
gaaatatgctaacatgttaattttgaagttcagtatccagtcttgaatcggtc |
20059505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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