View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_35 (Length: 316)
Name: NF5999_low_35
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 36563753 - 36564041
Alignment:
| Q |
14 |
gaaacaataaaaaccacatacaaactggtcattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatata |
113 |
Q |
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| T |
36563753 |
gaaacaataaaaaccacatacaaactggtcattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatata |
36563852 |
T |
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| Q |
114 |
tacatatattaaaccttctgtgtaagccagaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggct |
213 |
Q |
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| T |
36563853 |
tacatatattaaaccttctgtgtaagccagaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggct |
36563952 |
T |
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| Q |
214 |
tatatgcatatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattg |
302 |
Q |
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| T |
36563953 |
tatatgcatatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattg |
36564041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 36576588 - 36576670
Alignment:
| Q |
220 |
catatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattg |
302 |
Q |
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| T |
36576588 |
catatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaataatgaaaattatgtaccagcagtaattg |
36576670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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