View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_38 (Length: 298)
Name: NF5999_low_38
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 32903119 - 32902840
Alignment:
| Q |
1 |
ttttagaggaacaaatggttatacataataattgcatatgatcaaaataactcccaatcaaatattgattgtgaaagaatttaattaggggaagcatgca |
100 |
Q |
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| T |
32903119 |
ttttagaggaacaaatggttatacataataattgcatatgatcaaaataactcccaatcaaatattgattgtgaaagaatttaattaggggaagcatgca |
32903020 |
T |
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| Q |
101 |
tattgattttgaaaagaatctctcatgggtaaagatgatttctatttgagctgtgtttgaattagtctctaatttgaacctagatgttgagcaacttgaa |
200 |
Q |
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| T |
32903019 |
tattgattttgaaaagaatctctcatgggtaaagatgatttctatttgagctgtgtttgaattagtctctaatttgaacctagatgttgagcaacttgaa |
32902920 |
T |
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| Q |
201 |
gcgaagacgacgttcttttatgatagtttggaggaagagatctatagtcttgaagataatcatattatcaactctcctaa |
280 |
Q |
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| T |
32902919 |
gcgaagacgacgttcttttatgatagtttgggggaagagatctatagtcttgaagataatcatattatcaactctcctaa |
32902840 |
T |
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