View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_4 (Length: 643)
Name: NF5999_low_4
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 28 - 606
Target Start/End: Original strand, 38555486 - 38556060
Alignment:
| Q |
28 |
agcatcactaagaaactcataaaagtatagataaaggtagaaaagtaaagagatgaaa-tgcgaattaaatttgttcgtttgattggatgtgtcgattac |
126 |
Q |
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| T |
38555486 |
agcatcactaagaaactcataaaagta--gataaaggtagaaaagtaaagagatgaaaatgtgaattaagcttgttcgtttgattggatgtgtcgattac |
38555583 |
T |
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| Q |
127 |
aatatataaactcaatatttatagccaaaaactatgactattatccgaacaatgtgtcctacagtgagtaatccttactcggctatctttgcgggtaatt |
226 |
Q |
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| T |
38555584 |
aagatataaactcaatatttatagccaaaaactatggctattatccgaacaa---gtcctacagtgagtagtccttacccggctatctttgcgggtaatt |
38555680 |
T |
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| Q |
227 |
tatgaatattccttgctcttgggattgtgatgccccatgttcgactcccattttctccttcatgacatgatccattgaccacatccttagtgcacgattc |
326 |
Q |
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| T |
38555681 |
tgtgaatattccttgctcttgggattgtgataccccatgttcgactcccattttctccttcacgacatgattcattgacaacatccttggtgcacgattc |
38555780 |
T |
|
| Q |
327 |
catgataattatgtctctttcatcatccctcttgatggttagtggtgctacaaacatggaacataagttttgtgcaccattgtccagtctccactatatt |
426 |
Q |
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| T |
38555781 |
catgataatcatgtctctttcctcatccctcttgatggttagtggtgctacaaacatggaacatgagttttgtgcatcattgtccaatctccactatatt |
38555880 |
T |
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| Q |
427 |
ttgactcagtatgaggtctccacgaccaacgtactgcgttagtggtattgacaaagaatcaactcccctctcttagctattatagtctcgcctataactt |
526 |
Q |
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| T |
38555881 |
ttgactcagtatgaggtctccacgaccaacgtactgcgttagtggcattgacaaagaatcaactcccctctcttagctattatagtctcgcctataactt |
38555980 |
T |
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| Q |
527 |
ttgattgcataagaagtcttatcacctaaaagtacactcgtctatctaccaaggtcaacttacaaaataattatttttag |
606 |
Q |
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| T |
38555981 |
tcgatcgcataagaagtcttatcacctcaaagtacactcatctatctaccaaggtcaacttacaaaataattatttttag |
38556060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 634
Target Start/End: Original strand, 38556118 - 38556150
Alignment:
| Q |
602 |
tttagttgctctttgtccaatatatatgatgat |
634 |
Q |
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| T |
38556118 |
tttagttgctctttgtccaatatatatgatgat |
38556150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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