View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_40 (Length: 296)
Name: NF5999_low_40
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5084293 - 5084016
Alignment:
| Q |
1 |
tcatcagtgcttagactcatgcatttaatatcttattgaaaatggccaaactatacacttgcgactcatgcctctgcattctctctgtatcactctacta |
100 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||| |||| |||||||| ||||||||| |||||||| || |
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| T |
5084293 |
tcatcagtgcttagactcatgcatataatatcgtattgaaaatggccaagttatactcttttcactcttgcctctgtattctctctacttcactctatta |
5084194 |
T |
|
| Q |
101 |
ttacttcttcacttgcttagctttgatgagtactnnnnnnnncataaccaccgatgaattttcacttcttgcattcaaatcatcaattaccttagaccct |
200 |
Q |
| |
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||| |||||||||||||||||| || |||| | ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
5084193 |
ttatttcttcacttgcttagct---ataagtagtaaaaaaaacatcaccacagatgaattttcacttcttgcattcaaatcctcaattaccttagatcct |
5084097 |
T |
|
| Q |
201 |
tatcatatgcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgat |
281 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5084096 |
tatcatatgcttagaaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgat |
5084016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 5110921 - 5111055
Alignment:
| Q |
147 |
accaccgatgaattttcacttcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctacttcttctt |
246 |
Q |
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| T |
5110921 |
accacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctt |
5111020 |
T |
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| Q |
247 |
tctcttcatgcaattgggttggtgttacttgtgat |
281 |
Q |
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| T |
5111021 |
tctcttcatgcaattgggttggtgttacttgtgat |
5111055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 5093921 - 5094052
Alignment:
| Q |
150 |
accgatgaattttcacttcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctacttcttctttct |
249 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
5093921 |
accgatgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgt |
5094020 |
T |
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| Q |
250 |
cttcatgcaattgggttggtgttacttgtgat |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
5094021 |
cttcatgcaattgggttggtgttacttgtgat |
5094052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 5110858 - 5110907
Alignment:
| Q |
78 |
attctctctgtatcactctactattacttcttcacttgcttagctttgat |
127 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||||||| |||| |
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|
| T |
5110858 |
attctctctgcctcactctattattacctcttcacttgcttagctatgat |
5110907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 281
Target Start/End: Complemental strand, 14427934 - 14427798
Alignment:
| Q |
145 |
taaccaccgatgaattttcacttcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctacttcttc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
14427934 |
taaccaccgatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttc |
14427835 |
T |
|
| Q |
245 |
tttctcttcatgcaattgggttggtgttacttgtgat |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
14427834 |
tttctcttcatgcaattgggttggtgttacttgtgat |
14427798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 99 - 281
Target Start/End: Original strand, 16872319 - 16872498
Alignment:
| Q |
99 |
tattacttcttcacttgcttagctttgatgagtactnnnnnnnncataaccaccgatgaattttcacttcttgcattcaaatcatcaattaccttagacc |
198 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
16872319 |
tattacttcttcacttgcttagct---atgagtactaacaaaaacatcaccatagatgaattttcacttcttgcattcaaatcctctattaccttagacc |
16872415 |
T |
|
| Q |
199 |
cttatcatatgcttag---taattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgat |
281 |
Q |
| |
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||||||| | |||||| |||||||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
16872416 |
cttatcacaagcttagtaataattggtcaatctcctcttcta---cttctttctcatcatgtaattgggttggtgtcacttgtgat |
16872498 |
T |
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