View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_low_42 (Length: 294)

Name: NF5999_low_42
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_low_42
NF5999_low_42
[»] chr8 (1 HSPs)
chr8 (10-294)||(42393428-42393712)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 42393712 - 42393428
Alignment:
Q  10 acatcatcataaagagacgtctgccctcatcgagcatctttttcaagattttgaagaaaacatcagcagaggactgggatgttccagtattgcttgctat 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42393712 acatcatcataaagagacgtctgtcctcatcgagcatctttttcaagattttgaagaaaacatcagcagaggactgggatgttccagtattgcttgctat 42393613  T
Q  110 aatatgcgaagatttccccaacattgctttgctatcgggcagataagaaaaacatgcttgcagtcttcaggttcagaatcacatagaatgcaaatatctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42393612 aatatgcgaagatttccccaacattgctttgctatcgggcagataagaaaaacatgcttgcagtcttcaggttcagaatcacatagaatacaaatatctt 42393513  T
Q  210 cacactgaacccgtttattgattagatttccgcgggcaggcaagcaatcatggagggatcaccataggaaggggcggacgcatgt 294  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42393512 cacactgaacccgtttattgattagatttccgcgggtaggcaagcaatcatggagggatcaccataggaaggggcggacgcatgt 42393428  T

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