View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_47 (Length: 286)
Name: NF5999_low_47
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 28530231 - 28530477
Alignment:
| Q |
24 |
caattatactgccccatttgattatgcataccctccacctgcccctcttcatcaattagtaccctcagccccaccctcttatccttaccatgttcctcca |
123 |
Q |
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| T |
28530231 |
caattatactgccccatttgattatgcataccctccacctgcccctcttcatcaattagtaccctcagccccaccctcttatccttaccatgttcctcca |
28530330 |
T |
|
| Q |
124 |
gggagtcatcatagtcctcctcaacattctctttcacactcacaccatgctagcttattacaacatggatcatcctctcattattataattattatcagc |
223 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28530331 |
gggagtcatcatagtcctcctcaacattccctttcacactcacaccatgctagcttattacaacatggatcatcctctcattattataattattatcagc |
28530430 |
T |
|
| Q |
224 |
aaaatactcctcatgaagaccgtcctgatcttcattcgcgtcataat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28530431 |
aaaatactcctcatgaagaccgtcctgatcttcattcgcgtcataat |
28530477 |
T |
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