View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_49 (Length: 273)
Name: NF5999_low_49
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32174271 - 32174535
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174271 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
32174370 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174371 |
agagttcatgttgagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
32174470 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174471 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
32174535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32182357 - 32182621
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32182357 |
tcttgtaggcattctgtagcatcacaatcctttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcaa |
32182456 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32182457 |
agagttcatgttcagtaatgcaaaggtagttaacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccagg |
32182556 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
32182557 |
ccttagcagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcctctc |
32182621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32118575 - 32118839
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
32118575 |
tcttgtaggcattctgtagcatcacaatccttcgttagctcttcagcaatttcagctggagtaacttgaacttgtcctagaagctgttcaatcttttcaa |
32118674 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
32118675 |
agagttcatgttcagtaatgcagaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccagg |
32118774 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32118775 |
tcttaatagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
32118839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32157605 - 32157869
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32157605 |
tcttgtaggcattctgtagcatcacaatcctttgtgagctcttctccaatttcagcaggagtaacttgaacttctcctagaagcacttcaatcttttcaa |
32157704 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32157705 |
agagttcatgttcagtaatgcaaaggtagttagtaaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccagg |
32157804 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32157805 |
ccttaatagagcaggatcaagcctgtctttgtgatttgttgtgaaaacaattatgtgttcttctc |
32157869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 32207149 - 32206885
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32207149 |
tcttctagacattctgttgcatcacagtcctttgttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatctcttcaa |
32207050 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32207049 |
agagttcatgttgagtaatgcaaaggtagttaacaaccaattgcttcaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccagg |
32206950 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206949 |
tcttagcagagcaggatcaagcttgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
32206885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 32212224 - 32211960
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
32212224 |
tcttgtaggcattctgtagcatcaacatcctttgttagctcttctgcaatttcagcaggagtaacttgaacttctcctagaagcagttcaatcttttcaa |
32212125 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32212124 |
agagttcatgttgagtaatgcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccagg |
32212025 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32212024 |
ccttaatagagcaggatcaagcctttctttgtgatttgttgtgacaacaattatgtgttcttctc |
32211960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32110311 - 32110575
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
32110311 |
tcttgtaagcattctgtagcatcaacatcctttgttaacacttctgcaatttcagctggagtaacttgaacttctcctaaaagaacttcaatcttttcaa |
32110410 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32110411 |
agagttcatgttcagtaatacaaaggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccagg |
32110510 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32110511 |
ccttagcagagcaggatcaagtctgtctttgtgatttgttgtgaaaacaattatgtgttcttctc |
32110575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32156495 - 32156759
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32156495 |
tcttgtaggcattctgtagcatcaacatcctttgtaagctcttctgcaatttcagcaggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
32156594 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| | || ||||| |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
32156595 |
agagttcatgttcagtaatgcaaaggtagttaataatcaatttcttaaaagcagaaaagttgcaatatgacaagtgaatctgcttgtctattctaccagg |
32156694 |
T |
|
| Q |
201 |
ccttaacagagcaggatcaagcctgtctttgtgatttgttgtgaatacaattatgtgttcttctc |
265 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32156695 |
ccttaatagagcaggatcaagcctttctttgtgatttgttgtgaaaacaattatgtgttcttctc |
32156759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 32152422 - 32152639
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
32152422 |
tcttgtaggcattctgtagcatcacaatcctttgttagctcttctgcaatttcagcaggagtaacttgaacttctcctaaaagaacttcaatcttttcaa |
32152521 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccagg |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
32152522 |
agagttcatgttcagtaatgcaaaggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaaatgaatttgcttgtccattttaccagg |
32152621 |
T |
|
| Q |
201 |
ccttaacagagcaggatc |
218 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
32152622 |
ccttaacagagcatgatc |
32152639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2821345 - 2821156
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
2821345 |
tcttgtaggcattttgtagcatcacaatcctttgttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagaacttcaatcttttcaa |
2821246 |
T |
|
| Q |
101 |
agagttcatgttcagtaacgcagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtcca |
190 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2821245 |
agagttcatgttgagtaatgcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca |
2821156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32147666 - 32147755
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttca |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32147666 |
tcttgtaggcattctgtagcatcacaatcctttgttaactcttctgcaatttcagctggagtaacttgaacttctcctaaaagcacttca |
32147755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 32153431 - 32153506
Alignment:
| Q |
3 |
ttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttcagctggagtaacttgaacttctcct |
78 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
32153431 |
ttgtaggcattctgcagcatcaacctcctttgttagctcttctacaatttcagctggagtaacttgaacttgtcct |
32153506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32534252 - 32534305
Alignment:
| Q |
1 |
tcttgtaggcattctgtagcatcacaatccttggttagctcttctgcaatttca |
54 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
32534252 |
tcttgtaggcattctgtagcatcaacatcctttgttagctattctacaatttca |
32534305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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