View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_52 (Length: 260)
Name: NF5999_low_52
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_52 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4177 - 3934
Alignment:
| Q |
1 |
accatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4177 |
accatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatccc-tcaaattagt |
4079 |
T |
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| Q |
101 |
tctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctttcctctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078 |
tctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctttcctctgat |
3979 |
T |
|
| Q |
201 |
aatctagagtttggttgtgagataagtatagttttaccaacaatt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978 |
aatctagagtttggttgtgagataagtatagttttaccaacaatt |
3934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 3687 - 3614
Alignment:
| Q |
104 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaa |
176 |
Q |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccattacaa |
3614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 35774298 - 35774482
Alignment:
| Q |
4 |
atactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctcaaattag---- |
99 |
Q |
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|||||| |||||||||||| | |||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
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| T |
35774298 |
atactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagc |
35774397 |
T |
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| Q |
100 |
--ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
181 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| || ||||||||| |
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| T |
35774398 |
ttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaacaagttct |
35774482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
| Q |
47 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
139 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
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| Q |
140 |
tcttcttccttttctccttccatcatttccatcacaagttc |
180 |
Q |
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| T |
35848222 |
tcttttcctttttctccttccatcatttccatcacaagttc |
35848262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 35865814 - 35865944
Alignment:
| Q |
68 |
gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc |
160 |
Q |
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||||||| ||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| ||||| | | |||||||||||| |
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| T |
35865814 |
gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc |
35865913 |
T |
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| Q |
161 |
atcatttccatcacaagttctcttagctctt |
191 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
35865914 |
atcatttccatcacaagttctcttatctctt |
35865944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 35754280 - 35754369
Alignment:
| Q |
103 |
tagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctt |
191 |
Q |
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||||||||||||||||||| | || |||| || ||| || || | |||||||||||| ||||||||||| ||||||||| ||| ||||| |
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| T |
35754280 |
tagctttcttcttccactctatgctcttttgtttcatttgttttcccttttctcctttcatcatttccagtacaagttctgttatctctt |
35754369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 141 - 1
Alignment:
| Q |
47 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
139 |
Q |
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|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
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| Q |
140 |
tcttcttccttttctccttccatcatttccatcacaagttc |
180 |
Q |
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|||| | | |||||||||||||||||||||||||||||||| |
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| T |
41 |
tcttttcctttttctccttccatcatttccatcacaagttc |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 551 - 472
Alignment:
| Q |
103 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
181 |
Q |
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|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct |
472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 551 - 472
Alignment:
| Q |
103 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
181 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct |
472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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