View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_54 (Length: 251)
Name: NF5999_low_54
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34655173 - 34655415
Alignment:
| Q |
1 |
caatatctaaccatataatcatcattcacatcgttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaacatt |
100 |
Q |
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| T |
34655173 |
caatatctaaccatataatcatcattcacatcgttagaacaagaaccttgattcaaaagtaaacagatacgaaaaacgcaaacaaagaaaacacaacatt |
34655272 |
T |
|
| Q |
101 |
ttatctcagggttcggccagttgtgtctacgttctctgactacattgatattc----tattattcaagcttaggattacttttacaaatttacttcaaat |
196 |
Q |
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| T |
34655273 |
ttatctcagggctcggccagttgtgtctacgttctctgactacattgatattctatatattattcaagcttaggattacttttacaaatttactttaaat |
34655372 |
T |
|
| Q |
197 |
gttacggtccaatttacatgattactcctaagccacttagtat |
239 |
Q |
| |
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| T |
34655373 |
gctacggtccaatttacatgattactcctaagccacttagtat |
34655415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 3101737 - 3101700
Alignment:
| Q |
52 |
ttcaaaagtaaatagatacgaaaaacgcaaacaaagaa |
89 |
Q |
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| T |
3101737 |
ttcaaaagtaaacagatacgataaacgcaaacaaagaa |
3101700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 6263064 - 6263001
Alignment:
| Q |
33 |
gttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaa |
96 |
Q |
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| T |
6263064 |
gttagaacaacaatcctggttcaaaagaaaatagatacgaaaaacgcaaacagagaacacacaa |
6263001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 33717198 - 33717265
Alignment:
| Q |
34 |
ttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaacattt |
101 |
Q |
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||||||||| |||| | |||||||||||| |||||||||||| ||||||| |||| |||||| |||| |
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| T |
33717198 |
ttagaacaacaaccctagttcaaaagtaaacagatacgaaaaatgcaaacagagaacacacaagattt |
33717265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 5055928 - 5055884
Alignment:
| Q |
33 |
gttagaacaagaaccttgattcaaaagtaaatagatacgaaaaac |
77 |
Q |
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|||||||||| |||| || |||||||||||| ||||||||||||| |
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| T |
5055928 |
gttagaacaacaaccctggttcaaaagtaaaaagatacgaaaaac |
5055884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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