View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_low_55 (Length: 250)

Name: NF5999_low_55
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_low_55
NF5999_low_55
[»] chr7 (30 HSPs)
chr7 (11-250)||(28644275-28644514)
chr7 (25-233)||(12309035-12309243)
chr7 (74-233)||(29529344-29529501)
chr7 (17-249)||(2739495-2739723)
chr7 (10-246)||(2719726-2719961)
chr7 (74-246)||(20142689-20142860)
chr7 (78-249)||(24865073-24865243)
chr7 (17-175)||(9669592-9669750)
chr7 (27-151)||(29529588-29529712)
chr7 (27-151)||(28644555-28644679)
chr7 (27-117)||(44603537-44603627)
chr7 (27-117)||(44606575-44606665)
chr7 (27-120)||(33536667-33536762)
chr7 (78-175)||(21666093-21666190)
chr7 (17-147)||(29239362-29239494)
chr7 (78-175)||(42586145-42586242)
chr7 (27-111)||(9669431-9669517)
chr7 (78-151)||(2739770-2739843)
chr7 (38-112)||(8237841-8237917)
chr7 (94-151)||(29239259-29239316)
chr7 (74-133)||(28644752-28644811)
chr7 (41-147)||(29529773-29529880)
chr7 (17-63)||(9669896-9669942)
chr7 (78-148)||(12308906-12308976)
chr7 (28-127)||(18869508-18869609)
chr7 (208-249)||(2486234-2486275)
chr7 (208-249)||(9669261-9669302)
chr7 (78-151)||(33536820-33536893)
chr7 (30-62)||(24720596-24720628)
chr7 (166-238)||(24720690-24720762)
[»] chr3 (26 HSPs)
chr3 (17-249)||(13699839-13700071)
chr3 (78-221)||(26513561-26513703)
chr3 (27-151)||(1102082-1102208)
chr3 (27-161)||(31720806-31720941)
chr3 (17-120)||(27532457-27532560)
chr3 (17-127)||(37834435-37834546)
chr3 (84-174)||(42070272-42070361)
chr3 (27-151)||(1101903-1102025)
chr3 (32-249)||(12946364-12946585)
chr3 (17-143)||(494602-494730)
chr3 (27-102)||(1101416-1101491)
chr3 (27-151)||(1101721-1101842)
chr3 (33-151)||(4161112-4161232)
chr3 (160-245)||(17765285-17765370)
chr3 (160-245)||(19066605-19066690)
chr3 (78-175)||(494753-494850)
chr3 (205-246)||(37834341-37834382)
chr3 (27-177)||(494412-494567)
chr3 (213-249)||(1101255-1101291)
chr3 (27-63)||(32978991-32979027)
chr3 (20-63)||(495208-495251)
chr3 (17-63)||(3085496-3085542)
chr3 (78-148)||(13698470-13698539)
chr3 (78-127)||(3142148-3142197)
chr3 (78-151)||(31720998-31721071)
chr3 (27-63)||(4144821-4144857)
[»] chr2 (6 HSPs)
chr2 (19-233)||(24548334-24548549)
chr2 (78-166)||(24450634-24450722)
chr2 (17-59)||(24450972-24451014)
chr2 (17-68)||(24450752-24450803)
chr2 (27-127)||(45002647-45002750)
chr2 (17-57)||(24451335-24451375)
[»] chr1 (35 HSPs)
chr1 (25-249)||(34903997-34904217)
chr1 (27-249)||(11563974-11564197)
chr1 (17-171)||(43760596-43760752)
chr1 (17-151)||(15115753-15115888)
chr1 (17-151)||(15140269-15140404)
chr1 (74-151)||(34903867-34903944)
chr1 (17-63)||(15198758-15198804)
chr1 (28-180)||(15123973-15124126)
chr1 (28-180)||(15148161-15148314)
chr1 (27-143)||(15114841-15114959)
chr1 (27-143)||(15139357-15139475)
chr1 (17-152)||(43760434-43760569)
chr1 (17-63)||(15198585-15198631)
chr1 (78-147)||(18205397-18205466)
chr1 (208-249)||(43723452-43723493)
chr1 (17-61)||(15198939-15198983)
chr1 (78-233)||(14461217-14461371)
chr1 (33-141)||(32034916-32035026)
chr1 (17-120)||(11564487-11564592)
chr1 (78-148)||(15913269-15913339)
chr1 (17-63)||(34903800-34903846)
chr1 (27-61)||(35194039-35194073)
chr1 (17-63)||(43723565-43723611)
chr1 (33-63)||(43761403-43761433)
chr1 (78-127)||(3592660-3592709)
chr1 (17-54)||(15122949-15122986)
chr1 (17-54)||(15147137-15147174)
chr1 (213-246)||(32034830-32034863)
chr1 (17-62)||(34903438-34903483)
chr1 (27-63)||(3591906-3591942)
chr1 (27-63)||(15123051-15123087)
chr1 (27-63)||(15147239-15147275)
chr1 (27-63)||(31891109-31891145)
chr1 (27-112)||(39313082-39313168)
chr1 (103-151)||(43760798-43760846)
[»] chr8 (12 HSPs)
chr8 (17-180)||(28971542-28971704)
chr8 (42-160)||(23353301-23353420)
chr8 (31-174)||(32096116-32096259)
chr8 (17-107)||(28971838-28971927)
chr8 (78-127)||(36648058-36648107)
chr8 (33-118)||(27673246-27673333)
chr8 (20-63)||(1032144-1032187)
chr8 (78-153)||(34913599-34913674)
chr8 (79-177)||(6128036-6128134)
chr8 (17-63)||(30263908-30263954)
chr8 (196-249)||(12006218-12006271)
chr8 (208-249)||(30263795-30263836)
[»] scaffold0257 (1 HSPs)
scaffold0257 (20-173)||(22999-23152)
[»] chr6 (19 HSPs)
chr6 (27-177)||(14908698-14908842)
chr6 (17-127)||(7566111-7566220)
chr6 (16-174)||(2999800-2999960)
chr6 (27-180)||(12262111-12262263)
chr6 (27-117)||(7566458-7566548)
chr6 (98-179)||(12262395-12262476)
chr6 (17-177)||(5089620-5089781)
chr6 (78-166)||(2999500-2999588)
chr6 (10-141)||(12055884-12056017)
chr6 (27-92)||(12262291-12262356)
chr6 (27-61)||(7566335-7566369)
chr6 (10-141)||(20626908-20627041)
chr6 (78-151)||(12261981-12262054)
chr6 (17-57)||(2999620-2999660)
chr6 (96-175)||(2999156-2999235)
chr6 (78-132)||(4979936-4979990)
chr6 (78-128)||(7281152-7281202)
chr6 (27-117)||(12261767-12261859)
chr6 (78-151)||(14908898-14908971)
[»] scaffold0636 (1 HSPs)
scaffold0636 (27-246)||(815-1033)
[»] chr5 (21 HSPs)
chr5 (17-180)||(18615302-18615466)
chr5 (27-112)||(17762796-17762881)
chr5 (32-144)||(22565441-22565553)
chr5 (36-114)||(17762661-17762739)
chr5 (78-172)||(26657907-26658001)
chr5 (78-172)||(26929495-26929589)
chr5 (78-151)||(17762141-17762214)
chr5 (17-109)||(22492820-22492911)
chr5 (17-112)||(22554546-22554643)
chr5 (78-248)||(24651899-24652068)
chr5 (102-175)||(26657613-26657686)
chr5 (102-175)||(26929201-26929274)
chr5 (136-240)||(3974108-3974212)
chr5 (20-147)||(12048674-12048801)
chr5 (32-180)||(21118337-21118486)
chr5 (32-65)||(12048450-12048483)
chr5 (32-105)||(3419811-3419886)
chr5 (25-68)||(26658033-26658076)
chr5 (25-68)||(26929621-26929664)
chr5 (22-63)||(21117754-21117795)
chr5 (30-63)||(21117939-21117972)
[»] chr4 (22 HSPs)
chr4 (17-175)||(13540616-13540774)
chr4 (48-249)||(36297668-36297871)
chr4 (27-117)||(34852998-34853088)
chr4 (27-170)||(38626537-38626681)
chr4 (17-63)||(10205211-10205257)
chr4 (79-175)||(33881987-33882084)
chr4 (78-174)||(11132695-11132791)
chr4 (27-111)||(13540455-13540541)
chr4 (78-133)||(37996644-37996699)
chr4 (17-63)||(11132456-11132502)
chr4 (17-63)||(27530310-27530356)
chr4 (95-175)||(8181251-8181331)
chr4 (10-65)||(11132990-11133045)
chr4 (129-180)||(34853086-34853136)
chr4 (27-61)||(567377-567411)
chr4 (78-112)||(11132299-11132333)
chr4 (17-63)||(13540920-13540966)
chr4 (208-249)||(13540285-13540326)
chr4 (94-187)||(19583271-19583364)
chr4 (33-112)||(5409053-5409135)
chr4 (11-51)||(8181009-8181049)
chr4 (10-63)||(8181180-8181235)
[»] scaffold1609 (4 HSPs)
scaffold1609 (122-249)||(851-978)
scaffold1609 (17-127)||(219-330)
scaffold1609 (28-63)||(580-615)
scaffold1609 (78-148)||(453-523)
[»] scaffold0011 (1 HSPs)
scaffold0011 (27-63)||(63256-63292)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 28644514 - 28644275
Alignment:
Q  11 caaaggttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaatttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28644514 caaaggttgaacggttttttgcatataaaataaaaagttatttaatagagacattgtaataactttgattttgaaaatagtcatgagttttcaaaatttt 28644415  T
Q  111 ataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattt 210  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28644414 atcatatcaaatttctcatatatctacataaaaatttgttttcgcttatataagcaaataaaatccataactgttgtcactctattatttagtaaaattt 28644315  T
Q  211 tgtatatataagagaaaaatattgaataaaaacattacac 250  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  28644314 tgtatatataatagaaaaatattgaataaaaacattacac 28644275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 12309035 - 12309243
Alignment:
Q  25 ttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaattt 124  Q
    ||||||||||||||| ||||||||||||||||||||||| |  | ||| ||||||||||| ||||||| |||||||| |||| ||||| ||||||| |||    
T  12309035 ttttttgcatataaa-taaaaagttatttaatagaaacactacattaattttgattttgacaatagtcatgagttttaaaaaatttatcatatcaacttt 12309133  T
Q  125 ctcgtatatctacataaaa-atttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataaga 223  Q
    ||| | | |||||| |||| |||||||||||| ||||||||||||||||||| |||| || ||| |||| | ||||||  ||| ||||||||||||||||    
T  12309134 ctcatttgtctacaaaaaaaatttgttttcgcatatataagcaaataaaatctataactggtgtgactcaactatttaacaaatttttgtatatataaga 12309233  T
Q  224 gaaaaatatt 233  Q
    ||||||||||    
T  12309234 gaaaaatatt 12309243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 29529501 - 29529344
Alignment:
Q  74 tttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaa 173  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  29529501 tttgattttgaaaatagtcatgatttttcaaaattttatcatatcaactttctcatatatttacataaaaatttgttttcgcttatataagcaaataaaa 29529402  T
Q  174 tccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatatt 233  Q
    || |||| |   || |||| | ||||||  ||| |||||  |||||||||||||||||||    
T  29529401 tctataactagcgtgactcaactatttaacaaatttttg--tatataagagaaaaatatt 29529344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 2739723 - 2739495
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataata 116  Q
    |||||| || |||||| ||||||||||| ||||||| ||||||| || |  | ||| ||||||||||||||||||| ||| ||||||||| ||||| | |    
T  2739723 ttgaacagtcttttgcgtataaaataaagagttattcaatagaagcactacattaattttgattttgaaaatagtcatgacttttcaaaactttatcaca 2739624  T
Q  117 tcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtata 216  Q
    |||| |||||| |||||||||||||||  |||||||||| ||||||| |||||||||||||||| || ||| |||| | | || |  ||| |||||||||    
T  2739623 tcaactttctcatatatctacataaaatgttgttttcgcatatataaacaaataaaatccataactgatgtgactcaactcttcaacaaatttttgtata 2739524  T
Q  217 tataagagaaaaatattgaataaaaacattaca 249  Q
    |    | |||||||||| |||||||||||||||    
T  2739523 t----gtgaaaaatatttaataaaaacattaca 2739495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 2719726 - 2719961
Alignment:
Q  10 gcaaaggttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaat 107  Q
    ||||| |||||| ||| ||||||||||||| ||||||||||||||||| |||||  ||| ||| ||||||  ||| ||||||||  ||||||||||||||    
T  2719726 gcaaaagttgaagggtgttttgcatataaa-taaaaagttatttaatataaacaccgtactaattttgatattttaaaaatagt--tgagttttcaaaat 2719822  T
Q  108 tttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaa 207  Q
    || || ||||||| ||| ||  | || ||||||||||||||||||| | ||||||||||||||||||||| || || | | | |  | ||||||  | |     
T  2719823 ttaatcatatcaactttatctcacatgtacataaaaatttgttttcacatatataagcaaataaaatccacaactggtttgatttaactatttaacagat 2719922  T
Q  208 ttttgtatatataagagaaaaatattgaataaaaacatt 246  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  2719923 ttttgtatatataagagaaaaatatttaatagaaacatt 2719961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 246
Target Start/End: Original strand, 20142689 - 20142860
Alignment:
Q  74 tttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaa 173  Q
    ||||||||||||||||||| || ||||||||| |||||| ||||||| ||||||  |||| |||||||||| |||||||||| |||||||||||||||||    
T  20142689 tttgattttgaaaatagtcatgtgttttcaaa-ttttatcatatcaattttctcaaatatttacataaaaaattgttttcgcatatataagcaaataaaa 20142787  T
Q  174 tccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaataaaaacatt 246  Q
    || |||| |  ||| |||| | | ||||  ||| |||||||||||||||||||||||||| |||  |||||||    
T  20142788 tcaataactcatgtgactcaaatgtttaacaaatttttgtatatataagagaaaaatatttaatcgaaacatt 20142860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 24865243 - 24865073
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
    ||||||||||||||| ||| |||| |||||||||| ||||||| ||| || |||||||||||||||||||||||| || || |||| |||||||||||||    
T  24865243 attttgaaaatagtcatgaatttttaaaattttatcatatcaactttttcatatatctacataaaaatttgtttttgcatacataa-caaataaaatcca 24865145  T
Q  178 taattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
     || ||  || | |  | |||||| || |  ||||||||| ||||||||||||||| |||||||||||||||    
T  24865144 caactgacgttatttaactatttaatagatatttgtatatgtaagagaaaaatatttaataaaaacattaca 24865073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 9669750 - 9669592
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg-attttgaaaatagtcttgagttttcaaaattttataat 115  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| |    ||| |||  ||||||||||||||| ||||||||||| ||||||| ||    
T  9669750 ttgaacggtgttttgcatataaaataaaacgttatttaatagaaacactaccttaattttatattttgaaaatagtcatgagttttcaatattttatcat 9669651  T
Q  116 atcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||| | |||||||||||| || || |||||||||||   | |||||||||| ||||||||    
T  9669650 atcgattttctcgtatatgtatat-aaaatttgtttctacatatataagcacataaaatc 9669592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 29529712 - 29529588
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    ||||||||||||||||||||||||||||||||||||| |  | ||| ||||||||||||||||||  |||||||| |||||| ||| ||||| | |||||    
T  29529712 ttttgcatataaaataaaaagttatttaatagaaacactacattaattttgattttgaaaatagtgatgagtttttaaaattgtatcatatcgactttct 29529613  T
Q  127 cgtatatctacataaaaatttgttt 151  Q
    | |||||  | || |||||||||||    
T  29529612 catatatggatatgaaaatttgttt 29529588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 28644679 - 28644555
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    ||||||||| |||||||||||||||||||||||||   |  ||||| ||||||||||||||||||| |||||||| |||||||||| ||||  | |||||    
T  28644679 ttttgcataaaaaataaaaagttatttaatagaaatgctacaataattttgattttgaaaatagtcatgagttttgaaaattttatcatattgactttct 28644580  T
Q  127 cgtatatctacataaaaatttgttt 151  Q
    | |||||  | ||| ||||||||||    
T  28644579 catatatgaagatagaaatttgttt 28644555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 44603537 - 44603627
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatat 117  Q
    ||||||||| ||||||||||||||||||||||||||| |  |   | ||||||||||||||||||| |||||||| |||||||||| ||||    
T  44603537 ttttgcataaaaaataaaaagttatttaatagaaacactacatgtattttgattttgaaaatagtcatgagtttttaaaattttatcatat 44603627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 44606575 - 44606665
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatat 117  Q
    ||||||| ||| ||||||||||||||||||||||||| || |  || ||||||||||||||||||| |||||||| |||| ||||| ||||    
T  44606575 ttttgcacatagaataaaaagttatttaatagaaacactgcatgaattttgattttgaaaatagtcatgagttttaaaaactttatcatat 44606665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 33536762 - 33536667
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatatcaa 120  Q
    |||||||||||||||||||| ||| |||||||||||| | || |||  |||||  |||||||||||||  |||||||||||||||||| |||||||    
T  33536762 ttttgcatataaaataaaaatttaattaatagaaacactatattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatatcaa 33536667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 21666093 - 21666190
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||||||||||||||| ||||||||||||||||||| ||||  | |||||  | |||||| ||||||||||||||   | |||||||||| ||||||||    
T  21666093 attttgaaaatagtcatgagttttcaaaattttatcatatagactttctaatgtatctaaataaaaatttgtttattcatatataagcacataaaatc 21666190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 29239362 - 29239494
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataa 114  Q
    |||||| || |||||||| |||||||||||||||||||||| ||||| |  | | |  |||||  ||||||||||||| || |||||||||||||||       
T  29239362 ttgaactgtgttttgcatgtaaaataaaaagttatttaataaaaacactacattgatgttgattatttgaaaatagtcatgcgttttcaaaattttaccg 29239461  T
Q  115 tatcaaatttctcgtatatctacataaaaattt 147  Q
    |||| | |||||  ||||| |||||||||||||    
T  29239462 tatcgattttcttatatatgtacataaaaattt 29239494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 42586242 - 42586145
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    |||||||||||| ||  |||||| ||||||||||| ||||| | |||||| ||||| || ||||||||||||||  || |||||||| | ||||||||    
T  42586242 attttgaaaataatcacgagtttccaaaattttattatatcgactttctcatatatgtatataaaaatttgtttatgcatatataagtagataaaatc 42586145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 9669517 - 9669431
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaatttta 111  Q
    |||| ||||||||||||||||||||||||||||| || |  |  || ||||  ||||||||||||||| |||||||| |||||||||    
T  9669517 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaatttta 9669431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 2739843 - 2739770
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||||||||||||| | |||||||||||| |||| ||||| | |||||| ||||| ||| |||||| ||||||    
T  2739843 attttgaaaatagtcataagttttcaaaatgttatcatatcgactttctcatatatgtacttaaaaaattgttt 2739770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 8237917 - 8237841
Alignment:
Q  38 aaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttat 112  Q
    |||||||||  ||||||| ||||||||| || |||  |||||  ||||||||||||| |||||||||||||||||||    
T  8237917 aaataaaaatatatttaagagaaacattatattaatgttgatattttgaaaatagtcatgagttttcaaaattttat 8237841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 29239259 - 29239316
Alignment:
Q  94 tgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||||| ||||||||||| ||||||| |||||| | ||| |||||||||||||||||    
T  29239259 tgagtttccaaaattttatcatatcaactttctcatttatttacataaaaatttgttt 29239316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 28644811 - 28644752
Alignment:
Q  74 tttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatat 133  Q
    |||||||||||||||| ||  |||||||||||||||||| ||||| | |||||| |||||    
T  28644811 tttgattttgaaaataatcaggagttttcaaaattttatcatatcgactttctcatatat 28644752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 29529880 - 29529773
Alignment:
Q  41 taaaaagttatttaatagaaacattgtaataactttgatttt-gaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacat 139  Q
    |||||| ||| |||||||||||| || | |||  |||||||| |||||||||   |||||||||||||||||| ||||| | |||||| ||||| || ||    
T  29529880 taaaaatttagttaatagaaacaatgcattaatgttgatttttgaaaatagtaacgagttttcaaaattttatcatatcgactttctcatatatgtatat 29529781  T
Q  140 aaaaattt 147  Q
     |||||||    
T  29529780 taaaattt 29529773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 9669942 - 9669896
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||| | |||||||||||||||| |||||||||||||| |||||    
T  9669942 ttgaacgatgttttgcatataaaatacaaagttatttaatataaaca 9669896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 12308906 - 12308976
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttg 148  Q
    ||||||||||||||| |||||||| ||| ||||||   ||| | |||||||||||| |||| |||||||||    
T  12308906 attttgaaaatagtcatgagtttttaaatttttatctaatcgactttctcgtatatgtacacaaaaatttg 12308976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 18869508 - 18869609
Alignment:
Q  28 tttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatatcaaatttc 125  Q
    ||||||| |||| ||||||  ||||||||||||||| | || |||  |||||  |||||||||| ||  |||||||||||||||||| |||| || ||||    
T  18869508 tttgcatgtaaattaaaaatatatttaatagaaacagtatattaatgttgatattttgaaaataatcacgagttttcaaaattttattatattaactttc 18869607  T
Q  126 tc 127  Q
    ||    
T  18869608 tc 18869609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 2486275 - 2486234
Alignment:
Q  208 ttttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
    |||||||||||||| ||||||||||| |||| ||||||||||    
T  2486275 ttttgtatatataacagaaaaatattcaatataaacattaca 2486234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 9669302 - 9669261
Alignment:
Q  208 ttttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
    |||||||||||||| ||||||||||| |||||||||| ||||    
T  9669302 ttttgtatatataaaagaaaaatatttaataaaaacactaca 9669261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 33536893 - 33536820
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    |||||||||||||||  | |||||||||||||||| ||||  | |||||| ||||| || ||||| ||||||||    
T  33536893 attttgaaaatagtcacgtgttttcaaaattttatcatattgactttctcatatatgtatataaatatttgttt 33536820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 24720596 - 24720628
Alignment:
Q  30 tgcatataaaataaaaagttatttaatagaaac 62  Q
    |||||||||||||||||||||||| ||||||||    
T  24720596 tgcatataaaataaaaagttattttatagaaac 24720628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 24720690 - 24720762
Alignment:
Q  166 aaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaata 238  Q
    |||||||||| | ||||| ||| |||  | ||||||| ||| |||| ||||||||||||||||||||| ||||    
T  24720690 aaataaaatctaaaattggtgtgacttcactatttagcaaacttttttatatataagagaaaaatatttaata 24720762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 13699839 - 13700071
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataata 116  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||  | | ||| ||||||||| ||||||||| ||  ||||||||||||||| |||    
T  13699839 ttgaacagtcttttgtatataaaataaaaagttatttaatagaaacaccgcattaattttgattttaaaaatagtcatggattttcaaaattttatcata 13699938  T
Q  117 tcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtata 216  Q
    |||| |||||| | |||||||||||||||||||||| |  ||||||| |||| |||||||| | ||| ||| |||| | ||||||  |||||||||||||    
T  13699939 tcaactttctcatgtatctacataaaaatttgttttagtatatataaacaaacaaaatccacagttggtgtgactcaactatttaacaaaattttgtata 13700038  T
Q  217 tataagagaaaaatattgaataaaaacattaca 249  Q
    ||||||||||||||||  ||||  |||||||||    
T  13700039 tataagagaaaaatatctaatattaacattaca 13700071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 26513703 - 26513561
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
    ||||||||||||||| | | ||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||| | |||||||||||||||||||    
T  26513703 attttgaaaatagtcataa-ttttcaaaattttatcatatcaactttctcatatatctacataaaaattagttttcgcatgtataagcaaataaaatcca 26513605  T
Q  178 taattgttgtcactctattatttagtaaaattttgtatatataa 221  Q
    ||| || ||  |||| | ||||||  ||| ||||||||||||||    
T  26513604 taactggtgggactcaactatttaacaaatttttgtatatataa 26513561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 1102208 - 1102082
Alignment:
Q  27 ttttgcatata--aaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaattt 124  Q
    |||||||||||  ||||||||||||||||||||||||||||  | ||| ||||||||||||||||||| |||||||| |||||||||| ||||  | |||    
T  1102208 ttttgcatatatcaaataaaaagttatttaatagaaacattacattaattttgattttgaaaatagtcatgagtttttaaaattttatcatattgacttt 1102109  T
Q  125 ctcgtatatctacataaaaatttgttt 151  Q
    ||| ||||| || ||||||||||||||    
T  1102108 ctcatatatgtatataaaaatttgttt 1102082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 31720941 - 31720806
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttc-aaaattttataatatcaaatttc 125  Q
    ||||||||||||||||||||||||||||||||||||| |  | ||| ||||||||||||||||||  ||||||||| |||||||||   ||||||||||     
T  31720941 ttttgcatataaaataaaaagttatttaatagaaacactacattaattttgattttgaaaatagtgatgagttttcaaaaattttaccgtatcaaattta 31720842  T
Q  126 tcgtatatctacataaaaatttgttttcgcttatat 161  Q
    || || || ||||||| |||||||||| || |||||    
T  31720841 tcatacatgtacataataatttgtttttgcatatat 31720806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 27532457 - 27532560
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataata 116  Q
    |||||| || |||||||||||||||||||||||||| |||||||||| |  | ||| ||||||||| |||||  ||||||||||| |||||||||| |||    
T  27532457 ttgaacagtgttttgcatataaaataaaaagttattcaatagaaacactacattaattttgattttcaaaatgatcttgagtttttaaaattttatcata 27532556  T
Q  117 tcaa 120  Q
    ||||    
T  27532557 tcaa 27532560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 37834546 - 37834435
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataat 115  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||| | |  | ||| |||||| ||||||||||||||||||||||||||||||||| ||    
T  37834546 ttgaatggtgttttgcaaataaaataaaaatttatttaatagaaaaactacattaattttgatatttgaaaatagtcttgagttttcaaaattttatcat 37834447  T
Q  116 atcaaatttctc 127  Q
    ||| | ||||||    
T  37834446 atcgactttctc 37834435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 42070361 - 42070272
Alignment:
Q  84 aaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaat 174  Q
    |||||||||  |||||||||||||||||| || |||| |||||||||||||||||| |||| |||||||||| ||||||| ||||||||||    
T  42070361 aaaatagtcacgagttttcaaaattttatcatgtcaactttctcgtatatctacat-aaaagttgttttcgcatatataaacaaataaaat 42070272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 1102025 - 1101903
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    |||| |||||||||| ||||||||||||| ||||| |||  | |||  |||||||||||||||||| ||||||||||||||||||| ||||| | |||||    
T  1102025 ttttacatataaaattaaaagttatttaaaagaaatattacattaa--ttgattttgaaaatagtcatgagttttcaaaattttatcatatcgattttct 1101928  T
Q  127 cgtatatctacataaaaatttgttt 151  Q
    | ||| | || |||||| |||||||    
T  1101927 catatgtgtatataaaattttgttt 1101903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 12946585 - 12946364
Alignment:
Q  32 catataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgt 129  Q
    |||||||||| |||| |||||||||||||| | |  ||||| ||||||  |||||||||| |  || ||||| |||||||||| ||||  || ||||| |    
T  12946585 catataaaattaaaacttatttaatagaaatactacaataattttgatattttgaaaataataatgtgtttttaaaattttatcatattgaagttctcat 12946486  T
Q  130 atatcta--cataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagagaaa 227  Q
    |||| ||  ||| ||||||||||||||| |||| || ||||||||||||| || ||   | | || | ||||||  | | |||||||||||||| |||||    
T  12946485 atatatatacatgaaaatttgttttcgcatatagaaacaaataaaatccacaactgacatgattcgactatttaacatatttttgtatatataaaagaaa 12946386  T
Q  228 aatattgaataaaaacattaca 249  Q
    |||||| |||| ||||||||||    
T  12946385 aatatttaatagaaacattaca 12946364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 494730 - 494602
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataa--ctttgattttgaaaatagtcttgagttttcaaaattttataa 114  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| | || |||   ||  ||||||| |||| |  |||||||  | |||||||| |    
T  494730 ttgaacggtgttttgcatataaaataaaaagttattcaatagaaacactatattaatgtttatattttgacaatattaatgagtttatacaattttatca 494631  T
Q  115 tatcaaatttctcgtatatctacataaaa 143  Q
    |||||| |||||| ||||| |||||||||    
T  494630 tatcaactttctcatatatttacataaaa 494602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 1101491 - 1101416
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttc 102  Q
    |||||||||||||||||||| ||||||| |||||||| |    ||| ||||||||||||||||||| |||||||||    
T  1101491 ttttgcatataaaataaaaatttatttattagaaacactaatttaattttgattttgaaaatagtcctgagttttc 1101416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 1101842 - 1101721
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    ||||||||||||||||||||||||||||||||||||| |   | || | |  ||||||||||||||  || |||| |||||||||| ||||| | |||||    
T  1101842 ttttgcatataaaataaaaagttatttaatagaaacact---acaattatctttttgaaaatagtcacgaatttttaaaattttatcatatcgactttct 1101746  T
Q  127 cgtatatctacataaaaatttgttt 151  Q
    | || | ||| |||||| |||||||    
T  1101745 catacacctatataaaattttgttt 1101721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 4161232 - 4161112
Alignment:
Q  33 atataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgta 130  Q
    |||||||||||||| ||||| |||||||||| | || |||  || ||  |||||||||| |  |||||||||| |||||||| ||||||| |||||| ||    
T  4161232 atataaaataaaaatttattcaatagaaacactatattaatgtttatcttttgaaaatattaatgagttttcacaattttatcatatcaactttctcata 4161133  T
Q  131 tatctacataaaaatttgttt 151  Q
    ||| ||| |||||| ||||||    
T  4161132 tatttacctaaaaaattgttt 4161112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 17765370 - 17765285
Alignment:
Q  160 ataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaataaaaacat 245  Q
    ||||| |||||||||| ||||||| |||||||| | ||||||  ||| | ||| |||||||||||||||||||| |||| ||||||    
T  17765370 ataagaaaataaaatcaataattggtgtcactcaactatttaacaaattattgaatatataagagaaaaatatttaatagaaacat 17765285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 19066690 - 19066605
Alignment:
Q  160 ataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaataaaaacat 245  Q
    ||||| |||||||||| ||||||| |||||||| | ||||||  ||| | ||| |||||||||||||||||||| |||| ||||||    
T  19066690 ataagaaaataaaatcaataattggtgtcactcaactatttaacaaattattgaatatataagagaaaaatatttaatagaaacat 19066605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 494850 - 494753
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||||||||||||||| |||||||  |||||||||| |||   | |||||| ||||| ||||||||||||| |||  || |||||||||| | ||||||    
T  494850 attttgaaaatagtcatgagtttctaaaattttatcataatgattttctcatatatgtacataaaaatttatttatgcatatataagcacaaaaaatc 494753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 37834382 - 37834341
Alignment:
Q  205 aaattttgtatatataagagaaaaatattgaataaaaacatt 246  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  37834382 aaattttatatatataagagaaaaatattaaataaaaacatt 37834341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 494567 - 494412
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatag-aaacattgtaataactttg--attttg-aaaatagtcttgagttttcaaaattttataatatcaaat 122  Q
    |||| ||||||||||||||||||||||||||| |||||||  | ||| ||||  |||||| |||||| || |||||||| |||| |||||  ||| || |    
T  494567 ttttacatataaaataaaaagttatttaatagaaaacattacattaattttgatattttgaaaaataatcatgagttttgaaaaatttattttattaact 494468  T
Q  123 ttctcgtatatctacataaaaatttgtttt-cgcttatataagcaaataaaatcca 177  Q
    ||||| ||||| ||  ||||| |||||||| | | || ||||| ||||||||||||    
T  494467 ttctcatatatgtatgtaaaattttgttttccccgtacataagaaaataaaatcca 494412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 1101291 - 1101255
Alignment:
Q  213 tatatataagagaaaaatattgaataaaaacattaca 249  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1101291 tatatataagagaaaaatatttaataaaaacattaca 1101255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 32979027 - 32978991
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32979027 ttttgcatataaaataaaaaattatttaatagaaaca 32978991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 495251 - 495208
Alignment:
Q  20 aacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||| ||||  |||||||||||||||||||||||||||||||    
T  495251 aacggtattttaaatataaaataaaaagttatttaatagaaaca 495208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 3085542 - 3085496
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||| || |||||||||||||||||||| ||| ||||||||||||    
T  3085542 ttgaacagtgttttgcatataaaataaaaatttaattaatagaaaca 3085496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 13698470 - 13698539
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttg 148  Q
    ||||||||||| ||| |||||||||||| |||||| ||||| | |||||| ||||| || |||||||||||    
T  13698470 attttgaaaattgtcatgagttttcaaatttttatcatatc-actttctcatatatgtatataaaaatttg 13698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 3142197 - 3142148
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctc 127  Q
    |||||||||||||||  |||||||||||||||||| ||||| | ||||||    
T  3142197 attttgaaaatagtcacgagttttcaaaattttatcatatcgattttctc 3142148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 31721071 - 31720998
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||| |||||||||  |||||| |||||| ||||  ||||||||||||| ||||| ||  |||||||||||||    
T  31721071 attttaaaaatagtcacgagtttccaaaatgttatcgtatcaaatttctcatatatgtatttaaaaatttgttt 31720998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 4144857 - 4144821
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  4144857 ttttgcatataaagtaaaaagttatttcatagaaaca 4144821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 24548549 - 24548334
Alignment:
Q  19 gaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataatat 117  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| |  | ||| |||| | ||| ||||||||  ||||||||||||||||||| ||||    
T  24548549 gaacggtgttttgcatataaaataaaaagttatttaatataaacactacattaattttgttatttaaaaatagttatgagttttcaaaattttatcatat 24548450  T
Q  118 caaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatat 217  Q
    ||| |||||| |||||  |||||||||||||||||| | || ||||| |||||||||||| ||||| ||| | ||   |||||| || | ||||||||||    
T  24548449 caattttctcatatatgcacataaaaatttgttttcacataaataagaaaataaaatccacaattggtgtaattcagctatttattagatttttgtatat 24548350  T
Q  218 ataagagaaaaatatt 233  Q
    ||||||||||||||||    
T  24548349 ataagagaaaaatatt 24548334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 24450634 - 24450722
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagca 166  Q
    ||||| ||||||||| ||||||||||||||||||| ||||| | |||||| ||||| ||||||||||||| |||  || ||||||||||    
T  24450634 attttaaaaatagtcatgagttttcaaaattttatcatatcgattttctcatatatgtacataaaaatttatttatgcatatataagca 24450722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 24450972 - 24451014
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaataga 59  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  24450972 ttgaacggtgttttgcatataaaataaaaagttatttaataga 24451014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 24450752 - 24450803
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgta 68  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||| ||||    
T  24450752 ttgaacggtgttttgcatataaaataaaaggttattcaatagaaacactgta 24450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 45002647 - 45002750
Alignment:
Q  27 ttttgcatataaaataaaaagtt-atttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatatcaaatt 123  Q
    |||||||||||||||||||| || |||||||| ||||||| || |||  |||||  ||| ||||||| | | | ||||||||||||||| |||| |||||    
T  45002647 ttttgcatataaaataaaaaatttatttaataaaaacattttattaatgttgatattttaaaaatagccataaattttcaaaattttatcatattaaatt 45002746  T
Q  124 tctc 127  Q
    ||||    
T  45002747 tctc 45002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 24451335 - 24451375
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaata 57  Q
    ||||||||| |||||||||||||| || |||||||||||||    
T  24451335 ttgaacggtattttgcatataaaagaataagttatttaata 24451375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 34903997 - 34904217
Alignment:
Q  25 ttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaattt 124  Q
    ||||||| ||||||||||||||||| |||||||    || | |||||| |||||||||||||||||||  ||||||| |||| ||||  ||||||| | |    
T  34903997 ttttttgtatataaaataaaaagttttttaata----cactataataattttgattttgaaaatagtcaggagttttaaaaaatttaacatatcaactat 34904092  T
Q  125 ctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagag 224  Q
    ||| ||||||||| ||||||||| ||||||| ||||||||||||||||||| |||| || ||| |||| | ||||||  ||| |||||||| || |||||    
T  34904093 ctcatatatctacgtaaaaatttattttcgcatatataagcaaataaaatctataactggtgtgactcaactatttaacaaatttttgtatgtacaagag 34904192  T
Q  225 aaaaatattgaataaaaacattaca 249  Q
    ||||||||| |||| ||||| ||||    
T  34904193 aaaaatatttaatagaaacaataca 34904217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 11564197 - 11563974
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgag-ttttcaaaattttataatatcaaatttc 125  Q
    ||||||||||||| ||||||||||||||||||||||| || | ||| ||||||||||||||||||  |||| ||||||||||||||| || | || |||     
T  11564197 ttttgcatataaa-taaaaagttatttaatagaaacactgcattaattttgattttgaaaatagtaatgagtttttcaaaattttatcatgtaaactttt 11564099  T
Q  126 tcgtatatctacataaaaatttg--ttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataaga 223  Q
    || ||||| |||||||||| |||  |||| |  |||||||||||||||||| |||||||| ||| |||| | ||||||  ||| ||||||||||||||||    
T  11564098 tcatatatttacataaaaaattgtttttttgtatatataagcaaataaaattcataattggtgtgactcaactatttaacaaatttttgtatatataaga 11563999  T
Q  224 gaaaaatattgaataaaaacattaca 249  Q
     ||||||||| || | ||||||||||    
T  11563998 -aaaaatatttaaaagaaacattaca 11563974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 43760752 - 43760596
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttga--ttttgaaaatagtcttgagttttcaaaattttataa 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |  | | |  ||||   ||||||||| |||  |||||| |||||||| ||||    
T  43760752 ttgaacggtgttttgcatataaaataaaaagttatttaatagaaacagtacattgatgttgaatatttgaaaatggtcacgagtttccaaaatttaataa 43760653  T
Q  115 tatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataa 171  Q
    |||| | |||||| ||||||||||||||||||| |||  || |||||||||| ||||    
T  43760652 tatcgattttctcatatatctacataaaaatttatttatgcatatataagcacataa 43760596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 15115753 - 15115888
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataat 115  Q
    |||||||||  ||||||||||||||||| ||||| || | |||||||||| | ||| |||||| |||  |||||||  || |||||||||||||||| ||    
T  15115753 ttgaacggtggtttgcatataaaataaatagttacttgacagaaacattgcattaattttgatatttttaaatagtaatgggttttcaaaattttatcat 15115852  T
Q  116 atcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||| |||||  ||| | |||||||||||||||||    
T  15115853 atcaagtttcttatatttatacataaaaatttgttt 15115888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 15140269 - 15140404
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataat 115  Q
    |||||||||  ||||||||||||||||| ||||| || | |||||||||| | ||| |||||| |||  |||||||  || |||||||||||||||| ||    
T  15140269 ttgaacggtggtttgcatataaaataaatagttacttgacagaaacattgcattaattttgatatttttaaatagtaatgggttttcaaaattttatcat 15140368  T
Q  116 atcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||| |||||  ||| | |||||||||||||||||    
T  15140369 atcaagtttcttatatttatacataaaaatttgttt 15140404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 34903867 - 34903944
Alignment:
Q  74 tttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| | |||||  ||||| || ||||||||||||||    
T  34903867 tttgattttgaaaatagtcatgagttttcaaaattttatgatatcgactttcttatatatgtatataaaaatttgttt 34903944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15198758 - 15198804
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  15198758 ttgaacggtgttttgcatataaaataaaaagttatttaatagaaaca 15198804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 15123973 - 15124126
Alignment:
Q  28 tttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    |||||||||||||||||||||| ||| | | |||| ||| | ||| |||||  |||  |||||||   | |||||||||||| ||| ||||||| |||||    
T  15123973 tttgcatataaaataaaaagttgtttgacataaaccttgcattaattttgaaatttttaaatagtaacgggttttcaaaattctatcatatcaactttct 15124072  T
Q  127 cgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
      ||| | ||||||||||||||||||||| ||| ||| |||||||||| |||||    
T  15124073 tatatgtgtacataaaaatttgttttcgcatatctaaacaaataaaattcataa 15124126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 15148161 - 15148314
Alignment:
Q  28 tttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    |||||||||||||||||||||| ||| | | |||| ||| | ||| |||||  |||  |||||||   | |||||||||||| ||| ||||||| |||||    
T  15148161 tttgcatataaaataaaaagttgtttgacataaaccttgcattaattttgaaatttttaaatagtaacgggttttcaaaattctatcatatcaactttct 15148260  T
Q  127 cgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
      ||| | ||||||||||||||||||||| ||| ||| |||||||||| |||||    
T  15148261 tatatgtgtacataaaaatttgttttcgcatatctaaacaaataaaattcataa 15148314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 15114841 - 15114959
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataa--ctttgattttgaaaatagtcttgagttttcaaaattttataatatcaaattt 124  Q
    |||||||||||||||||||||||||||| |||||||| |  ||| |   ||  ||||||||||||||||||||||||||| | ||||| ||||| | |||    
T  15114841 ttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatatctatttt 15114940  T
Q  125 ctcgtatatctacataaaa 143  Q
     || ||||| || ||||||    
T  15114941 ttcatatatgtatataaaa 15114959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 15139357 - 15139475
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataa--ctttgattttgaaaatagtcttgagttttcaaaattttataatatcaaattt 124  Q
    |||||||||||||||||||||||||||| |||||||| |  ||| |   ||  ||||||||||||||||||||||||||| | ||||| ||||| | |||    
T  15139357 ttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatatctatttt 15139456  T
Q  125 ctcgtatatctacataaaa 143  Q
     || ||||| || ||||||    
T  15139457 ttcatatatgtatataaaa 15139475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 43760569 - 43760434
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgta--ataactttgattttgaaaatagtcttgagttttcaaaattttataa 114  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||| | ||  |||  ||  ||||||| |||| |  |||||||  | |||||||| |    
T  43760569 ttgaacggtgttttacatataaaataaaaagttattcaatagaaacactatattatagtttatattttgataatattaatgagtttctacaattttatca 43760470  T
Q  115 tatcaaatttctcgtatatctacataaaaatttgtttt 152  Q
    |||||| ||||||  |||| ||||||||||||||||||    
T  43760469 tatcaactttctc--atatatacataaaaatttgtttt 43760434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15198585 - 15198631
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||    
T  15198585 ttgaacgatgttttgcatataaaataaaaagttattcaatagaaaca 15198631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 18205466 - 18205397
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaattt 147  Q
    ||||||||||||| |  | |||||||||||||||| ||||||| |||||  ||||| |||||||||||||    
T  18205466 attttgaaaatagacacgggttttcaaaattttatcatatcaattttcttatatatgtacataaaaattt 18205397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 43723493 - 43723452
Alignment:
Q  208 ttttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
    |||||||||||||||||||||||||| |||| ||||||||||    
T  43723493 ttttgtatatataagagaaaaatattaaatagaaacattaca 43723452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 15198939 - 15198983
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaa 61  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||||    
T  15198939 ttgaacggtgtttttcatataaaataaatagttatttaatagaaa 15198983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 14461217 - 14461371
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
    ||||| ||||||| |  ||||||| |||| ||||||||||| | ||||||  |||||||||| ||  ||| ||| ||| ||||||| ||||||||||| |    
T  14461217 attttaaaaatagccacgagttttaaaaaatttataatatcgactttctcacatatctacat-aatttttttttccgcatatataatcaaataaaatcaa 14461315  T
Q  178 taattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatatt 233  Q
     || || ||| | || ||||||||  | | |||||| ||||||||| |||||||||    
T  14461316 caactgatgtgattcaattatttaacagatttttgtgtatataagataaaaatatt 14461371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 32035026 - 32034916
Alignment:
Q  33 atataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgta 130  Q
    ||||||||| |||||||||||||||||| || |  | ||| ||||  ||||| |||||||||  |||||||||||||||||| || |  | |||||| ||    
T  32035026 atataaaatgaaaagttatttaatagaagcactacattaattttgatattttaaaaatagtcacgagttttcaaaattttatcatcttgattttctcata 32034927  T
Q  131 tatctacataa 141  Q
    ||| |||||||    
T  32034926 tatgtacataa 32034916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 11564592 - 11564487
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttataa 114  Q
    ||||||||| |||| ||| |||| || ||| ||| ||||||||||||||| | |||  |||  |||||||||||||||    |||||||||||||||| |    
T  11564592 ttgaacggtgtttttcatttaaagtagaaatttaattaatagaaacattgcattaatgttgatattttgaaaatagtcacttgttttcaaaattttatca 11564493  T
Q  115 tatcaa 120  Q
    ||||||    
T  11564492 tatcaa 11564487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 15913339 - 15913269
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttg 148  Q
    ||||||||| || | ||||||||| |||||||||| ||||||| |||||| |||   ||||||||||||||    
T  15913339 attttgaaagtaattttgagtttttaaaattttatcatatcaattttctcatatcagtacataaaaatttg 15913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 34903800 - 34903846
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||| || |||||||||| ||||||||| ||||||||||||||||    
T  34903800 ttgaacagtcttttgcatatgaaataaaaaattatttaatagaaaca 34903846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 35194073 - 35194039
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaa 61  Q
    ||||||||||||||| |||||||||||||||||||    
T  35194073 ttttgcatataaaattaaaagttatttaatagaaa 35194039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 43723611 - 43723565
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||| || ||||||||||||||||| |||||||||| |||||    
T  43723611 ttgaacggtgttatgcatataaaataaaaatttatttaatataaaca 43723565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 43761433 - 43761403
Alignment:
Q  33 atataaaataaaaagttatttaatagaaaca 63  Q
    |||||||||||||||||||||||||||||||    
T  43761433 atataaaataaaaagttatttaatagaaaca 43761403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 3592660 - 3592709
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctc 127  Q
    |||||||||||||||  |||||||||||||||||| ||||| | ||||||    
T  3592660 attttgaaaatagtcacgagttttcaaaattttatcatatcgactttctc 3592709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 15122949 - 15122986
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttattta 54  Q
    |||||| || ||||||||||||||||||||||||||||    
T  15122949 ttgaactgtgttttgcatataaaataaaaagttattta 15122986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 15147137 - 15147174
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttattta 54  Q
    |||||| || ||||||||||||||||||||||||||||    
T  15147137 ttgaactgtgttttgcatataaaataaaaagttattta 15147174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 32034863 - 32034830
Alignment:
Q  213 tatatataagagaaaaatattgaataaaaacatt 246  Q
    ||||||||||||||||||||| ||||||||||||    
T  32034863 tatatataagagaaaaatatttaataaaaacatt 32034830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 34903438 - 34903483
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaac 62  Q
    |||||| || |||||||||||||||||||| ||| |||||||||||    
T  34903438 ttgaaccgtgttttgcatataaaataaaaatttaattaatagaaac 34903483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 3591906 - 3591942
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  3591906 ttttgcatataaaatgaaaaattatttaatagaaaca 3591942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 15123051 - 15123087
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  15123051 ttttgcatataaaataaacagttatttattagaaaca 15123087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 15147239 - 15147275
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  15147239 ttttgcatataaaataaacagttatttattagaaaca 15147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 31891109 - 31891145
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  31891109 ttttgcatataaaataaaatgttatttaatataaaca 31891145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 39313168 - 39313082
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttat 112  Q
    ||||||||||||| |||||| ||| |||||||||||| || | |||  |||||  ||||||||||||   ||||||||||||||||||    
T  39313168 ttttgcatataaa-taaaaatttaattaatagaaacactgcattaatcttgatattttgaaaatagttacgagttttcaaaattttat 39313082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 43760846 - 43760798
Alignment:
Q  103 aaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||| |||| ||||||| |||||| ||||| |||||||||||||||||    
T  43760846 aaaatgttatcatatcaactttctcatatatttacataaaaatttgttt 43760798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 28971704 - 28971542
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataata 116  Q
    |||||| || |||||||||||||||||| |||||||||| ||||||| |  | ||| ||||||||||||||||||| ||||||||||||||||||| |||    
T  28971704 ttgaacagtcttttgcatataaaataaatagttatttaaaagaaacagtacattaattttgattttgaaaatagtcatgagttttcaaaattttatcata 28971605  T
Q  117 tcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
    || | ||| || |||||||| |||||||||||||||| | ||||||| | ||||||||||||||    
T  28971604 tc-attttttcatatatctaaataaaaatttgttttctcatatataaactaataaaatccataa 28971542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 23353301 - 23353420
Alignment:
Q  42 aaaaagttattta-atagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacata 140  Q
    ||||||||||||  ||||||||| |  | ||| ||||||||||||||||||| || |||||||||||||||| |||| || |||||| ||||| ||||||    
T  23353301 aaaaagttatttttatagaaacactacattaattttgattttgaaaatagtcatgtgttttcaaaattttatcatattaactttctcatatatgtacata 23353400  T
Q  141 aaaatttgttttcgcttata 160  Q
    ||| |||| |||||| ||||    
T  23353401 aaattttgatttcgcatata 23353420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 32096116 - 32096259
Alignment:
Q  31 gcatataaaataaaaagttatttaatagaaa--cattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatca-aatttctc 127  Q
    |||||||||||||||| ||||||||||||||  ||||  | ||  ||| ||||| ||||||||| ||||||||||||||||||| ||||||  |||| |     
T  32096116 gcatataaaataaaaatttatttaatagaaaaacattacattattttttattttaaaaatagtcatgagttttcaaaattttatcatatcaccattttt- 32096214  T
Q  128 gtatatctacataaaaatttgttttcgcttatataagcaaataaaat 174  Q
      |||||||||| ||||||| ||||||  ||||||||||||||||||    
T  32096215 -aatatctacat-aaaatttattttcgtatatataagcaaataaaat 32096259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 28971927 - 28971838
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaat 107  Q
    |||||| || |||||||||||||||||||| |||||||||||||||| |  | ||||  |||||||| |||||| |||||||||| |||||    
T  28971927 ttgaacagtgttttgcatataaaataaaaatttatttaatagaaacactacattaacaatgattttg-aaatagacttgagtttttaaaat 28971838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 36648107 - 36648058
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctc 127  Q
    ||||||||||||||| | |||||| |||||||||| ||||||||||||||    
T  36648107 attttgaaaatagtcgtaagtttttaaaattttatcatatcaaatttctc 36648058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 27673246 - 27673333
Alignment:
Q  33 atataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttataatatc 118  Q
    |||||||||||||||||||| |||||||| | |  | ||| ||||  ||||| ||||||||| |||||||| |||||||||| |||||    
T  27673246 atataaaataaaaagttattaaatagaaatactacattaattttgatattttaaaaatagtcatgagtttttaaaattttatcatatc 27673333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 1032187 - 1032144
Alignment:
Q  20 aacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||| |||||||||||||||||||| |||||||||| |||||    
T  1032187 aacggtgttttgcatataaaataaaaaattatttaatataaaca 1032144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 34913674 - 34913599
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttc 153  Q
    |||||| ||||||||||| ||||| |||||||||| ||||||| |||| | |||    ||||||||||||||||||    
T  34913674 attttgtaaatagtcttgggtttttaaaattttatcatatcaactttcacatatcggcacataaaaatttgttttc 34913599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 6128134 - 6128036
Alignment:
Q  79 ttttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
    |||||||||||||| |||||||| ||| |||||| | ||||| ||||| ||||   ||||| ||||||||||| | | ||| ||| || ||||||||||    
T  6128134 ttttgaaaatagtcatgagtttttaaatttttatcacatcaactttcttgtatcgttacatgaaaatttgtttccacatatgtaaacacataaaatcca 6128036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 30263954 - 30263908
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||| || ||||||||||||||||| |||||||||| |||||    
T  30263954 ttgaacggtgttatgcatataaaataaaaatttatttaatataaaca 30263908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 12006271 - 12006218
Alignment:
Q  196 tatttagtaaaattttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
    |||||| |||| |||| |||||||||||||| |||||| |||| ||||||||||    
T  12006271 tatttaataaatttttatatatataagagaataatatttaatagaaacattaca 12006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 30263836 - 30263795
Alignment:
Q  208 ttttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
    ||||||| |||||||||||||||||| |||| ||||||||||    
T  30263836 ttttgtacatataagagaaaaatattaaatagaaacattaca 30263795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 22999 - 23152
Alignment:
Q  20 aacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatca 119  Q
    |||||| |||||||||| ||||||||||||||||||| |||||| || | ||||||||||||||||||||||| | | ||||||||||||||  |||||     
T  22999 aacggtgttttgcatatgaaataaaaagttatttaattgaaacactgcattaactttgattttgaaaatagtcataaattttcaaaattttaacatatcg 23098  T
Q  120 aatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaa 173  Q
    | |||||| ||||| ||||||||| ||  |||| || |||||||| ||||||||    
T  23099 actttctcatatatgtacataaaatttgtttttggcatatataaggaaataaaa 23152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 14908842 - 14908698
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    ||||||||||||||||||||||||||||||||||||| |  | ||| ||||||||||||||||||| |||||||| ||||||||||  |||||| ||| |    
T  14908842 ttttgcatataaaataaaaagttatttaatagaaacactacactaattttgattttgaaaatagtcatgagtttttaaaattttatcttatcaactttgt 14908743  T
Q  127 cgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
     ||||||||||      |||| ||| ||| |||||||||||||||||||||    
T  14908742 tgtatatctac------atttctttccgcatatataagcaaataaaatcca 14908698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 7566220 - 7566111
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataata 116  Q
    |||||| || |||||||||||||||||| |||||||||||||||||| |  | ||| ||| ||||||||||||||| |||||||| |||||||||| |||    
T  7566220 ttgaacagtcttttgcatataaaataaatagttatttaatagaaacactacattaa-ttttattttgaaaatagtcatgagtttttaaaattttatcata 7566122  T
Q  117 tcaaatttctc 127  Q
    |||| ||||||    
T  7566121 tcaattttctc 7566111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 2999800 - 2999960
Alignment:
Q  16 gttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttata 113  Q
    |||||||||| |||||||| ||||||||||| ||||||| |||||||| | || ||| ||| ||  |||||||||| || |||||||| ||||||||||     
T  2999800 gttgaacggtgttttgcatgtaaaataaaaatttatttattagaaacaatatattaatttttatgttttgaaaataatcatgagttttaaaaattttatt 2999899  T
Q  114 atatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaat 174  Q
     ||| | ||||||  ||||| || |||||||||||||||||| || ||||  |||||||||    
T  2999900 ttattatatttcttatatatgtatataaaaatttgttttcgcgtacataataaaataaaat 2999960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 12262111 - 12262263
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttct 126  Q
    |||||||||||||||||||| ||||| |||||||||| |  | | | ||||||||||||||||||| | |||||| |||||||||| ||||| | |||||    
T  12262111 ttttgcatataaaataaaaaattattaaatagaaacaatacattta-tttgattttgaaaatagtcattagtttttaaaattttatcatatcgactttct 12262209  T
Q  127 cgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
    |  |||| || ||||||||||||||  ||  ||||||||| |||||||| ||||    
T  12262210 cagatatgtatataaaaatttgtttgtgcagatataagcatataaaatcaataa 12262263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 7566548 - 7566458
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatat 117  Q
    ||||||||| ||||||||||||||||||||||||||| |  | ||| ||| ||||||||||||||| || ||||| |||||||||| ||||    
T  7566548 ttttgcatacaaaataaaaagttatttaatagaaacactacattaatttttattttgaaaatagtcatgtgtttttaaaattttatcatat 7566458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 12262395 - 12262476
Alignment:
Q  98 ttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccata 179  Q
    ||||||||||||||| |||||| ||||||| |||||| |||||||||| ||||||| | |||||||| |||| |||||||||    
T  12262395 ttttcaaaattttatcatatcacatttctcatatatcaacataaaaatctgttttcacatatataagaaaatcaaatccata 12262476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 5089620 - 5089781
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttataa 114  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| |  | |||  |||  |||||||||||| || |||| ||| |||| |||||      
T  5089620 ttgaacggtgttttgcatataaagtaaaaagttatttaatagaaacactacattaatgttgatattttgaaaataatcatgag-tttaaaaaatttattt 5089718  T
Q  115 tatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
    ||| || |||||  ||| | || |||||||||||||||||  || ||||| ||||||||||||    
T  5089719 tattaactttcttatatgtgtatataaaaatttgttttcgtgtacataagaaaataaaatcca 5089781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 2999500 - 2999588
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagca 166  Q
    ||||||||||||||| ||| |||| |||||||||| |||||   |||||| ||||| ||||||||||||| |||  |||||||||||||    
T  2999500 attttgaaaatagtcatgactttttaaaattttatcatatctgttttctcatatatgtacataaaaatttatttatgcttatataagca 2999588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 12056017 - 12055884
Alignment:
Q  10 gcaaaggttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataacttt--gattttgaaaatagtcttgagttttcaaaat 107  Q
    ||||| ||| || ||| |||||||||||||||||||| ||||||||||||||| ||  |  || |||   |||||||||||||||  || |||||||||     
T  12056017 gcaaacgttaaatggtgttttgcatataaaataaaaatttatttaatagaaacttttcatcaattttcatattttgaaaatagtcacgaattttcaaaag 12055918  T
Q  108 tttataatatcaaatttctcgtatatctacataa 141  Q
    ||||| ||||| | |||||| ||||| |||||||    
T  12055917 tttatcatatcgattttctcatatatgtacataa 12055884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 12262291 - 12262356
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtc 92  Q
    ||||||||||||||||||||||||||||||||||| | |  | ||| ||| |||||||||||||||    
T  12262291 ttttgcatataaaataaaaagttatttaatagaaatactacattaattttaattttgaaaatagtc 12262356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 7566369 - 7566335
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaa 61  Q
    |||||||||||||||||||||||||||||||||||    
T  7566369 ttttgcatataaaataaaaagttatttaatagaaa 7566335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 20626908 - 20627041
Alignment:
Q  10 gcaaaggttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataacttt--gattttgaaaatagtcttgagttttcaaaat 107  Q
    ||||| ||| || ||| |||||||||||||||||||| ||||||||||||||||    |  || |||   |||||||||||||||  || |||||||||     
T  20626908 gcaaacgttaaatggtgttttgcatataaaataaaaatttatttaatagaaacaaaacatcaattttcatattttgaaaatagtcacgaattttcaaaag 20627007  T
Q  108 tttataatatcaaatttctcgtatatctacataa 141  Q
    ||||| ||||| | |||||| ||||| |||||||    
T  20627008 tttatcatatcgattttctcatatatgtacataa 20627041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 12261981 - 12262054
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||||||||||||| | ||||||||||||| ||| ||||  | |||||| ||||| || ||||||||||||||    
T  12261981 attttgaaaatagtcattagttttcaaaattctatcatattgactttctcatatatgtatataaaaatttgttt 12262054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 2999620 - 2999660
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaata 57  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  2999620 ttgaacggtgttttgcatataaaataaaaagttattcaata 2999660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 2999156 - 2999235
Alignment:
Q  96 agttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||||| ||||||||||| ||||| | |||||| ||||| ||||||||||||| |||  || |||||||| | ||||||||    
T  2999156 agtttccaaaattttatcatatctattttctcatatatgtacataaaaatttatttatgcatatataagtagataaaatc 2999235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 4979936 - 4979990
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtata 132  Q
    |||||||||||||||  ||||||||||||| |||| ||||| | |||||||||||    
T  4979936 attttgaaaatagtcacgagttttcaaaatattatcatatcgactttctcgtata 4979990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 7281202 - 7281152
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcg 128  Q
    ||||| |||||||||  |||||||| ||||||||| |||||||||||||||    
T  7281202 attttaaaaatagtcacgagttttctaaattttatcatatcaaatttctcg 7281152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 12261767 - 12261859
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatat 117  Q
    |||||||||||| ||||||| ||| |||||||||||| || | |||  |||||  |||||||||||||  ||||||| |||| ||||| ||||    
T  12261767 ttttgcatataacataaaaatttaattaatagaaacaatgcattaatgttgatactttgaaaatagtcacgagttttaaaaaatttatcatat 12261859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 14908971 - 14908898
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    ||||||||||||||| |||||||  |||||||||| ||||| | |||||  ||||| || |||||| |||||||    
T  14908971 attttgaaaatagtcatgagtttctaaaattttatcatatcgactttcttatatatgtatataaaactttgttt 14908898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 1033 - 815
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttataatatcaaattt 124  Q
    ||||| ||||||||||||||||||||||||| || || || | ||| ||||  ||||| |||||||||   ||||||||| ||||||| ||||| | |||    
T  1033 ttttgaatataaaataaaaagttatttaatataatcactgcattaattttgttatttttaaaatagtc---agttttcaacattttattatatcgacttt 937  T
Q  125 ctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagag 224  Q
    ||| ||||| |||||||||| |||||||||  |||||||| |||||||||||| || ||  |  | || | ||||||  ||| ||||||||||| |||||    
T  936 ctcctatatatacataaaaaattgttttcgtatatataagtaaataaaatccacaactgacgcaattcaactatttaacaaatttttgtatatacaagag 837  T
Q  225 aaaaatattgaataaaaacatt 246  Q
    ||||||||| |||| |||||||    
T  836 aaaaatatttaatagaaacatt 815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 18615466 - 18615302
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataat 115  Q
    |||||||||  |||||||||||||||||||||||||| | |||||||||| | ||| ||| || |||  |||||||   | |||||||||||||||| ||    
T  18615466 ttgaacggtggtttgcatataaaataaaaagttatttgacagaaacattgcattaatttttatattttcaaatagtaacgggttttcaaaattttatcat 18615367  T
Q  116 atcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
    ||||| |||||| |||   ||||||||||||||||||||| ||| ||| |||||||||| |||||    
T  18615366 atcaactttctcatatgcgtacataaaaatttgttttcgcatatttaaacaaataaaattcataa 18615302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 17762796 - 17762881
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttat 112  Q
    ||||||||||||||||||||||||||||||||||||| |  | ||| |||||||||||||||| || |||||||||||||||||||    
T  17762796 ttttgcatataaaataaaaagttatttaatagaaacactacattaattttgattttgaaaatactcatgagttttcaaaattttat 17762881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 22565441 - 22565553
Alignment:
Q  32 catataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtat 131  Q
    |||||||||||||||||||||||||| ||| | |  | ||| ||||||||| ||||||||  |||||||| |||||||||| ||||||| |||||  |||    
T  22565441 catataaaataaaaagttatttaataaaaatactacattaattttgattttaaaaatagttatgagtttttaaaattttatcatatcaactttcttatat 22565540  T
Q  132 atctacataaaaa 144  Q
    |||||||||||||    
T  22565541 atctacataaaaa 22565553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 17762661 - 17762739
Alignment:
Q  36 taaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataa 114  Q
    |||||||||||||||||||| ||||||| |  | ||| ||||||||||||||||||| |||||||| ||||||||||||    
T  17762661 taaaataaaaagttatttaacagaaacactacattaattttgattttgaaaatagtcatgagtttttaaaattttataa 17762739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 26657907 - 26658001
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaa 172  Q
    ||||||||||||||| | |||||  |||||||||| ||||||| |||||| ||||| ||||||||||||| |||  || |||||||||| |||||    
T  26657907 attttgaaaatagtcataagtttataaaattttatcatatcaattttctcatatatgtacataaaaatttatttatgcatatataagcacataaa 26658001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 26929495 - 26929589
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaa 172  Q
    ||||||||||||||| | |||||  |||||||||| ||||||| |||||| ||||| ||||||||||||| |||  || |||||||||| |||||    
T  26929495 attttgaaaatagtcataagtttataaaattttatcatatcaattttctcatatatgtacataaaaatttatttatgcatatataagcacataaa 26929589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 17762141 - 17762214
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttt 151  Q
    |||||||||||||||  |||||||||||||||||| ||||||| |||||| ||||| || ||||||||| ||||    
T  17762141 attttgaaaatagtcacgagttttcaaaattttatcatatcaactttctcatatatgtatataaaaattagttt 17762214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 22492911 - 22492820
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattt 109  Q
    |||||| || ||||||||||||||||||||||||||||||  ||||| |  | ||| ||||| ||||||||||||| |||||||| |||||||    
T  22492911 ttgaacagtgttttgcatataaaataaaaagttatttaatttaaacagtacattaattttga-tttgaaaatagtcatgagtttttaaaattt 22492820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 22554546 - 22554643
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttat 112  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||||||||| | |||  |||  ||||| |||||||||  |  |||||||||||||||    
T  22554546 ttgaacggtgttttgcatataaaataaaaatttaattaatagaaacattgcattaatattgatattttaaaaatagtcacggattttcaaaattttat 22554643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 248
Target Start/End: Complemental strand, 24652068 - 24651899
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatcca 177  Q
    ||||| |||||| || | ||||||||||||||||| ||||| | |||    || || ||||| |||||||||||| || ||||||| ||||||||||| |    
T  24652068 attttaaaaataatcatcagttttcaaaattttattatatcgatttttctatacatgtacattaaaatttgttttggcatatataaacaaataaaatcta 24651969  T
Q  178 taattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaataaaaacattac 248  Q
     || ||    || || | |||||| || | |||||||||||||||||||||||||| |||| |||||||||    
T  24651968 aaactgaca-cattcgactatttaatagatttttgtatatataagagaaaaatatttaatagaaacattac 24651899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 26657613 - 26657686
Alignment:
Q  102 caaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||||||||||| ||||||| |||||| ||||| ||||||||||||| |||  || |||||||||| ||||||||    
T  26657613 caaaattttatcatatcaattttctcatatatgtacataaaaatttatttatgcatatataagcacataaaatc 26657686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 26929201 - 26929274
Alignment:
Q  102 caaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||||||||||| ||||||| |||||| ||||| ||||||||||||| |||  || |||||||||| ||||||||    
T  26929201 caaaattttatcatatcaattttctcatatatgtacataaaaatttatttatgcatatataagcacataaaatc 26929274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 3974212 - 3974108
Alignment:
Q  136 acataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattga 235  Q
    |||||||| ||||||||||| ||||||| ||||||||||| ||||    ||| |||| | ||||||  ||| |||||||||| ||||| ||||||||| |    
T  3974212 acataaaagtttgttttcgcatatataaacaaataaaatctataacccatgtgactcaactatttaagaaatttttgtatatgtaagacaaaaatattta 3974113  T
Q  236 ataaa 240  Q
    |||||    
T  3974112 ataaa 3974108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 12048801 - 12048674
Alignment:
Q  20 aacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaa--tagtcttgagttttcaaaattttataatat 117  Q
    |||||| ||||  ||||||||||||||||||||||||||||||| |  | | |  ||||| ||  |||  |||||  ||||||| |||||||||| ||||    
T  12048801 aacggtgttttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatattctaaaagtagtc--gagtttttaaaattttatcatat 12048704  T
Q  118 caaatttctcgtatatctacataaaaattt 147  Q
    ||| |||||| ||||| |||||||||||||    
T  12048703 caattttctcatatatgtacataaaaattt 12048674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 21118337 - 21118486
Alignment:
Q  32 catataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgt 129  Q
    |||||||||||||| |||||||||||||||||||  | ||| ||||  |||||||||||| || | |||||| ||||  |||   ||| || ||||||      
T  21118337 catataaaataaaa-gttatttaatagaaacattaaattaattttgatattttgaaaataatcattagttttaaaaaaattagtttattaactttctcag 21118435  T
Q  130 atatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
    |||| || |||||||||||||||||  || || || |||||||||||||||    
T  21118436 atatgtatataaaaatttgttttcgtatacattagaaaataaaatccataa 21118486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 12048483 - 12048450
Alignment:
Q  32 catataaaataaaaagttatttaatagaaacatt 65  Q
    ||||||||||||||||||||||||||||||||||    
T  12048483 catataaaataaaaagttatttaatagaaacatt 12048450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 3419811 - 3419886
Alignment:
Q  32 catataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaa 105  Q
    |||||||||||||||| |||||||||||||||||| | |||  |||  ||||| ||||||||| ||| ||||||||    
T  3419811 catataaaataaaaagctatttaatagaaacattgcattaatattgatattttaaaaatagtcatgaattttcaaa 3419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 26658033 - 26658076
Alignment:
Q  25 ttttttgcatataaaataaaaagttatttaatagaaacattgta 68  Q
    |||||||||||||||||||||||||||| |||| || |||||||    
T  26658033 ttttttgcatataaaataaaaagttattcaatataatcattgta 26658076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 26929621 - 26929664
Alignment:
Q  25 ttttttgcatataaaataaaaagttatttaatagaaacattgta 68  Q
    |||||||||||||||||||||||||||| |||| || |||||||    
T  26929621 ttttttgcatataaaataaaaagttattcaatataatcattgta 26929664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 21117754 - 21117795
Alignment:
Q  22 cggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||| ||||| |||||||||||||||||||| ||||||||||    
T  21117754 cggtgttttggatataaaataaaaagttattcaatagaaaca 21117795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 21117939 - 21117972
Alignment:
Q  30 tgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||||||||||||||||||||||||| |||||    
T  21117939 tgcatataaaataaaaagttatttaataaaaaca 21117972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 13540774 - 13540616
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg-attttgaaaatagtcttgagttttcaaaattttataat 115  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| |    ||| |||  ||||||||||||||| ||||||||||| ||||||| ||    
T  13540774 ttgaacggtgttttgcatataaaataaaacgttatttaatagaaacactaccttaattttatattttgaaaatagtcatgagttttcaatattttatcat 13540675  T
Q  116 atcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    ||| | |||||||||||| || || |||||||||||   | |||||||||| ||||||||    
T  13540674 atcgattttctcgtatatgtatat-aaaatttgtttctacatatataagcacataaaatc 13540616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 36297668 - 36297871
Alignment:
Q  48 ttatttaatagaaacattgtaataactttgat--tttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaat 145  Q
    |||||||||||||||| |  | ||||||||||  |||||||| | || || ||||| |||||||||| ||||| | | |||| ||||| ||  ||| |||    
T  36297668 ttatttaatagaaacactacattaactttgatattttgaaaacaatcatgtgtttttaaaattttatcatatcgactatctcatatatgtatgtaataat 36297767  T
Q  146 ttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataagagaaaaatattgaataaaaacat 245  Q
    ||||||||||  |||||||||||||||||||| || | | ||   || | | ||||  ||| |||||||||||||||||||||||||| |||||||| ||    
T  36297768 ttgttttcgcaaatataagcaaataaaatccacaactctcgtggttcaactgtttaacaaatttttgtatatataagagaaaaatatttaataaaaatat 36297867  T
Q  246 taca 249  Q
    ||||    
T  36297868 taca 36297871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 34852998 - 34853088
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatat 117  Q
    |||||||||||||||||||| |||||||||||||||| |  | ||| ||||||||||||| ||||| | |||||| |||||||||| ||||    
T  34852998 ttttgcatataaaataaaaatttatttaatagaaacactaaattaattttgattttgaaagtagtcataagtttttaaaattttatcatat 34853088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 38626537 - 38626681
Alignment:
Q  27 ttttgcatataaaataaaaagt-tatttaatagaaacattgtaataactttgattttgaaaatagtcttgagttttcaaaattttataatatcaaatttc 125  Q
    |||| ||| |||||| |||||| ||||||||||||||| |  | ||| || || |||||||| |||| ||||||||||||||||||| ||||| | ||||    
T  38626537 ttttacatttaaaatcaaaagtgtatttaatagaaacaatacactaatttagaatttgaaaagagtcatgagttttcaaaattttattatatcgactttc 38626636  T
Q  126 tcgtatatctacataaaaatttgttttcgcttatataagcaaata 170  Q
    |  || |  |||||||||  |||||||||| ||||||||||||||    
T  38626637 ttatacacgtacataaaatattgttttcgcatatataagcaaata 38626681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 10205211 - 10205257
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  10205211 ttgaacggtgttttgcatataaaataaaaagttattcaatagaaaca 10205257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 33881987 - 33882084
Alignment:
Q  79 ttttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttg-ttttcgcttatataagcaaataaaatc 175  Q
    ||||||||||||||  ||||||||||||||  || ||||| | ||||   ||||| |||||||||||||| |||| |||||||||||||||| |||||    
T  33881987 ttttgaaaatagtcaagagttttcaaaattgaatcatatcgactttcatatatatgtacataaaaatttgttttttgcttatataagcaaatgaaatc 33882084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 11132695 - 11132791
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaat 174  Q
    |||||||||||||||  |||||||||||||||||||||||  | ||| || ||||  |||||||||| || |||  || |||||||||| |||||||    
T  11132695 attttgaaaatagtcacgagttttcaaaattttataatattgattttttcatataggtacataaaaaattatttatgcatatataagcacataaaat 11132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 13540541 - 13540455
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaacattgtaataactttg--attttgaaaatagtcttgagttttcaaaatttta 111  Q
    |||| ||||||||||||||||||||||||||||| || |  |  || ||||  ||||||||||||||| |||||||| |||||||||    
T  13540541 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaatttta 13540455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 37996699 - 37996644
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttataatatcaaatttctcgtatat 133  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||| |||||| |||||    
T  37996699 attttaaaaatagtcatgagttttcaaaattttattatatcaactttctcttatat 37996644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 11132456 - 11132502
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||||    
T  11132456 ttgaacggtgttttgcatataaaataaaaagttattcaataaaaaca 11132502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 27530310 - 27530356
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  27530310 ttgaagggtgttttgcatataaaataaaaatttatttaatagaaaca 27530356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 8181331 - 8181251
Alignment:
Q  95 gagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatc 175  Q
    |||||| ||||||||||| ||||| | |||||| ||||| ||||||||||||| ||   || |||||||||| ||||||||    
T  8181331 gagtttccaaaattttatcatatcgattttctcatatatatacataaaaatttattaaagcatatataagcacataaaatc 8181251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 11132990 - 11133045
Alignment:
Q  10 gcaaaggttgaacggttttttgcatataaaataaaaagttatttaatagaaacatt 65  Q
    ||||| |||||||  | ||| ||||||||||||||||||||| |||||||||||||    
T  11132990 gcaaaagttgaactatgtttcgcatataaaataaaaagttatctaatagaaacatt 11133045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 34853086 - 34853136
Alignment:
Q  129 tatatctacataaaaatttgttttcgcttatataagcaaataaaatccataa 180  Q
    |||||||||||||||||||| |||||| ||||||||  ||||||||||||||    
T  34853086 tatatctacataaaaatttg-tttcgcatatataagttaataaaatccataa 34853136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 567377 - 567411
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaa 61  Q
    |||||||||||||||||||| ||||||||||||||    
T  567377 ttttgcatataaaataaaaatttatttaatagaaa 567411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 11132299 - 11132333
Alignment:
Q  78 attttgaaaatagtcttgagttttcaaaattttat 112  Q
    ||||||||||||||| |||||||||||||||||||    
T  11132299 attttgaaaatagtcatgagttttcaaaattttat 11132333  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 13540966 - 13540920
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||| | |||||||||||||||| |||||||||||||| |||||    
T  13540966 ttgaacgatgttttgcatataaaatacaaagttatttaatataaaca 13540920  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 13540326 - 13540285
Alignment:
Q  208 ttttgtatatataagagaaaaatattgaataaaaacattaca 249  Q
    |||||||||||||| ||||||||||| |||||||||| ||||    
T  13540326 ttttgtatatataaaagaaaaatatttaataaaaacactaca 13540285  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 19583271 - 19583364
Alignment:
Q  94 tgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgt 187  Q
    |||||||||||||| |||| | ||||| |||||| |||   ||||||||||||||||| | |   |||||||| |||||||||| ||| |||||    
T  19583271 tgagttttcaaaatattatcacatcaactttctcatatcggtacataaaaatttgtttccacaagtataagcacataaaatccacaatggttgt 19583364  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 5409053 - 5409135
Alignment:
Q  33 atataaaataaaaagttatttaatagaaacattgtaataactttga---ttttgaaaatagtcttgagttttcaaaattttat 112  Q
    |||||||||||||| |||||||||||||||| |   |||| |||||   |||| |||||||||  ||||| ||||||||||||    
T  5409053 atataaaataaaaatttatttaatagaaacactactataattttgatatttttaaaaatagtcacgagttctcaaaattttat 5409135  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 8181049 - 8181009
Alignment:
Q  11 caaaggttgaacggttttttgcatataaaataaaaagttat 51  Q
    |||| ||||||| || |||||||||||||||||||||||||    
T  8181049 caaacgttgaaccgtgttttgcatataaaataaaaagttat 8181009  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 8181235 - 8181180
Alignment:
Q  10 gcaaaggttgaacggttttttgcatata--aaataaaaagttatttaatagaaaca 63  Q
    ||||| |||||||| | |||||||||||  ||||||||||||||| ||||||||||    
T  8181235 gcaaacgttgaacgatgttttgcatatataaaataaaaagttattcaatagaaaca 8181180  T

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Target: scaffold1609 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 851 - 978
Alignment:
Q  122 tttctcgtatatctacataaaaatttgttttcgcttatataagcaaataaaatccataattgttgtcactctattatttagtaaaattttgtatatataa 221  Q
    |||||| |||||  |||||||||||||||||| | |||||||||||||||| |||| || ||  |  | || | |||||| || | ||||||||||||||    
T  851 tttctcatatatggacataaaaatttgttttcacatatataagcaaataaattccacaactgacgcgattcaactatttaatagatttttgtatatataa 950  T
Q  222 gagaaaaatattgaataaaaacattaca 249  Q
    |||||||||||| |||| || |||||||    
T  951 gagaaaaatatttaatagaaccattaca 978  T

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Target: scaffold1609; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 219 - 330
Alignment:
Q  17 ttgaacggttttttgcatataaaataaaaagttatttaatagaaacattgtaataactttgat-tttgaaaatagtcttgagttttcaaaattttataat 115  Q
    |||||||||  | ||||||| ||||||||| |||||||||||||||| | || |||  ||||  |||||||||||||  |||||||||||||||||| ||    
T  219 ttgaacggtgatatgcatattaaataaaaaattatttaatagaaacactatattaatgttgaagtttgaaaatagtcacgagttttcaaaattttatcat 318  T
Q  116 atcaaatttctc 127  Q
    ||| | ||||||    
T  319 atcgactttctc 330  T

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Target: scaffold1609; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 580 - 615
Alignment:
Q  28 tttgcatataaaataaaaagttatttaatagaaaca 63  Q
    ||||||||||||||||||||||||||||||||||||    
T  580 tttgcatataaaataaaaagttatttaatagaaaca 615  T

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Target: scaffold1609; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 453 - 523
Alignment:
Q  78 attttgaaaatagtct-tgagttttcaaaattttataatatcaaatttctcgtatatctacataaaaatttg 148  Q
    |||||||||||||||  ||| ||||||||||||||| ||||||| |||||| ||||| || |||||||||||    
T  453 attttgaaaatagtcactga-ttttcaaaattttatcatatcaactttctcatatatgtatataaaaatttg 523  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 63292 - 63256
Alignment:
Q  27 ttttgcatataaaataaaaagttatttaatagaaaca 63  Q
    |||||||||||||||||||  ||||||||||||||||    
T  63292 ttttgcatataaaataaaattttatttaatagaaaca 63256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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