View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_56 (Length: 248)
Name: NF5999_low_56
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_56 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 1355680 - 1355440
Alignment:
| Q |
8 |
tgagaagaaggaaactaaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattac |
107 |
Q |
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| T |
1355680 |
tgagaagaaggaaactaaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattac |
1355581 |
T |
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| Q |
108 |
tagtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaa |
207 |
Q |
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| T |
1355580 |
tagtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaa |
1355481 |
T |
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| Q |
208 |
ccttccccaactcttttgcattgttcctgaaactacttcct |
248 |
Q |
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| T |
1355480 |
ccttccccaactctttagcattgttcctgaaactacttcct |
1355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 1362465 - 1362326
Alignment:
| Q |
109 |
agtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaac |
208 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1362465 |
agtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaac |
1362366 |
T |
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| Q |
209 |
cttccccaactcttttgcattgttcctgaaactacttcct |
248 |
Q |
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| T |
1362365 |
tttccccaactctttagcattgttcctgaaactacttcct |
1362326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 11532409 - 11532305
Alignment:
| Q |
128 |
attggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgca |
227 |
Q |
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||||||| |||| |||||||| | ||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| |
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| T |
11532409 |
attggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggca |
11532310 |
T |
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| Q |
228 |
ttgtt |
232 |
Q |
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||||| |
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| T |
11532309 |
ttgtt |
11532305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 12847066 - 12846966
Alignment:
| Q |
136 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
235 |
Q |
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| T |
12847066 |
gaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcct |
12846967 |
T |
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| Q |
236 |
g |
236 |
Q |
| |
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| T |
12846966 |
g |
12846966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 14589470 - 14589399
Alignment:
| Q |
177 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttcct |
248 |
Q |
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|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || |||||||| |
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| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttcct |
14589399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 14623128 - 14623057
Alignment:
| Q |
177 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttcct |
248 |
Q |
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| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttcct |
14623057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 29955088 - 29955013
Alignment:
| Q |
136 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaacctt |
211 |
Q |
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| T |
29955088 |
gaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaacctt |
29955013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 51369360 - 51369465
Alignment:
| Q |
131 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattg |
230 |
Q |
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|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||| ||||| |
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| T |
51369360 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcattt |
51369459 |
T |
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| Q |
231 |
ttcctg |
236 |
Q |
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|||||| |
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| T |
51369460 |
ttcctg |
51369465 |
T |
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