View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_58 (Length: 247)
Name: NF5999_low_58
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40904311 - 40904550
Alignment:
| Q |
1 |
cttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattccagtgttttgatattaatatataactaggatgagtcgatgttttcct |
100 |
Q |
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| T |
40904311 |
cttgacaaagtttgtattcttagctgtggaatatgcacaggtataggagattccagtgttttgatattaacatataactaggatgagtctatgttttcgt |
40904410 |
T |
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| Q |
101 |
atttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaaacctggttcttctgtcgctatctttggacttggagctg |
200 |
Q |
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| T |
40904411 |
aattcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaaacccggttcttctgtcgctatctttggacttggagctg |
40904510 |
T |
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| Q |
201 |
ttggccttgctgtgtgttactctcttatcttgtgtctgtg |
240 |
Q |
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| T |
40904511 |
ttggccttgctgtatgttactctcatatcttgtgtgtgtg |
40904550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40899745 - 40899967
Alignment:
| Q |
1 |
cttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattccagtgttttgatattaatatataactaggatgagtcgatgttttcct |
100 |
Q |
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| T |
40899745 |
cttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattccaatgtttagatatttatatataattaggctgagtctatgtttctct |
40899844 |
T |
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| Q |
101 |
atttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaaacctggttcttctgtcgctatctttggacttggagctg |
200 |
Q |
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| T |
40899845 |
aattcaatttgcttccatgcttttacaggtcttggtgctactatcaatgtagctaaaccaaaacccggttcatctgttgctatctttggccttggagctg |
40899944 |
T |
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| Q |
201 |
ttggccttgctgtgtgttactct |
223 |
Q |
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| T |
40899945 |
ttgggcttgcggtatgttactct |
40899967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 40881164 - 40881320
Alignment:
| Q |
63 |
gatattaatatataactaggatgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaa |
162 |
Q |
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| T |
40881164 |
gatattaatatataactaggttgagtatatgatttcctaattcaatttgcattcatggt-ct-taggtcttggtgctaccatcaatgttgctaaaccgaa |
40881261 |
T |
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| Q |
163 |
acctggttcttctgtcgctatctttggacttggagctgttggccttgctgtgtgttact |
221 |
Q |
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| T |
40881262 |
acccggttcttctgttgctatctttggacttggagctgttggccttgctgtatgttact |
40881320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40880811 - 40880871
Alignment:
| Q |
1 |
cttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattccagtgttt |
61 |
Q |
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| T |
40880811 |
cttgataaagtttgtattctcagctgtggaatatgcacaggtataggagattccaatgttt |
40880871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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