View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_59 (Length: 243)
Name: NF5999_low_59
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 26219097 - 26219224
Alignment:
| Q |
104 |
tatattgagaaagtcgcattgaaattagatgaagttagggacgaaattaaattaaaaattgaagttgaatcaacttgtgagtgttgaaaattttgagatt |
203 |
Q |
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| T |
26219097 |
tatattgagaaagtcgcattgaaattagatgaagttagggacgaaattaaattaaaaattgaagttgaatcaacttgtgagtgttgaaaattttgagatt |
26219196 |
T |
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| Q |
204 |
ttgcaatgactatttggtatgagatatt |
231 |
Q |
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| T |
26219197 |
ttgcaatgactatttggtatgagatatt |
26219224 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 26218460 - 26218544
Alignment:
| Q |
20 |
ttcccactgtgaaaataccacctgctacttttcaggtgtaaccgaacatcgagcgccaccaccatacctctgtgaaatcctccat |
104 |
Q |
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| T |
26218460 |
ttcccactgtgaaaataccacctgctacttttcaggtgtaaccgaacatcgagcgccaccaccatacctctgtgaaatcctccat |
26218544 |
T |
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