View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_low_6 (Length: 559)
Name: NF5999_low_6
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27715828 - 27716072
Alignment:
| Q |
1 |
acgggtgaagaaaaagataatcatgatgaacccaaagaaatccnnnnnnncaaatgaggcaatgttgcggattttcatgtgcaaaagggacttcatgatc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
27715828 |
acgggtgaggaaaaagataatcatgacgaacccaaagaaaatccaaaaaacaaatgaggcaatgttgcagattttaatgtgcaaaagggacttcatgatc |
27715927 |
T |
|
| Q |
101 |
ccaactttgagtccatttctgaagtcatgaacccaatgtcaatatttatattgtttgacacttttaagattggttgatcactttttaaattggttcaacc |
200 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
27715928 |
ccaacttggagtccatatctaaagtcatgaacccaatgtcaatatttatattgtttgacacttttaagattgattgatcactttttaaattgattcaacc |
27716027 |
T |
|
| Q |
201 |
tattcaaaagtatgttgaatagtagttaattcccgttcggacttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
27716028 |
tattcaaaagtatgttgaatagtagttaattaccgttcgaacttt |
27716072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 389 - 559
Target Start/End: Original strand, 27716237 - 27716406
Alignment:
| Q |
389 |
gatataataagataatgtatttcggcttctatttttcatgttggtgtaacaatcctattgaatgtgtggtaacctttgtattttatataaggcttaaaat |
488 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27716237 |
gatataataagataatgtatttcagcttctatttttcatgttggtgtaacaatcctattgaatgtgtggtaacccttgtattttatataaggcttaaaat |
27716336 |
T |
|
| Q |
489 |
atatattccgccgttatagaattatcaagtttcatatttcatctccataaatgaaaatcataatttttaat |
559 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27716337 |
atatattccgccgttatagaa-tatcaagtttcatatttcatctccataaatgaaaatcataatttttaat |
27716406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 27716127 - 27716162
Alignment:
| Q |
277 |
taatctcaaaagcattgtgctattgcatatatgtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27716127 |
taatctcaaaagcattgtgctattgcatatatgtca |
27716162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University