View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_64 (Length: 239)
Name: NF5999_low_64
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 37237553 - 37237343
Alignment:
| Q |
16 |
aaaacttcaaaatttataccatgtatatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggttcgactcgagtg |
115 |
Q |
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| T |
37237553 |
aaaacttcaaaatttataccatgtatatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaagggttcgactcaagtg |
37237454 |
T |
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| Q |
116 |
gtcaatgaggtccggtgaaggtcaagttgattggaagtaccaagttcaaaacctggttgttacaatcactggctagactttatgaattatcagagtccat |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37237453 |
gtcaatgaggtctggtgaaggtcaagttgattggaagtaccaagttcaaagcctggttgttacaatcactggctagactttatgaattatcagagtccat |
37237354 |
T |
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| Q |
216 |
ttccacgagaa |
226 |
Q |
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||||||||||| |
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| T |
37237353 |
ttccacgagaa |
37237343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 37230626 - 37230426
Alignment:
| Q |
26 |
aatttataccatgtatatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggttcgactcgagtggtcaatgagg |
125 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37230626 |
aatttattccatgtatatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggttcgactcgagtggtcaatgagg |
37230527 |
T |
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| Q |
126 |
tccggtgaaggtcaagttgattggaagtaccaagttcaaaacctggttgttacaatcactggctagactttatgaattatcagagtccatttccacgaga |
225 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37230526 |
tccggtgaaggtcaagttgattggaagtactaagttcaaaacctggttgttacaatcattggctagactttatgaattatcagagtccatttccacgaga |
37230427 |
T |
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| Q |
226 |
a |
226 |
Q |
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| |
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| T |
37230426 |
a |
37230426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 33596090 - 33596220
Alignment:
| Q |
67 |
ttagcatttaaatatactctaactgaaattaaatggttcgactcgagtggtcaatgaggtccggtgaaggtcaagttgattggaagtaccaagttcaaaa |
166 |
Q |
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||||||||| ||||||||||||||||||||||||||||| | || |||| | |||||||| ||||||||||||||| ||||| ||||||||||||| || |
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| T |
33596090 |
ttagcatttgaatatactctaactgaaattaaatggttctattcaagtgattaatgaggttcggtgaaggtcaagtcgattgcaagtaccaagttcgaac |
33596189 |
T |
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| Q |
167 |
cctggttgttacaatcactggctagacttta |
197 |
Q |
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| T |
33596190 |
cctggttgtaacaatcattgactagatttta |
33596220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 33582830 - 33582966
Alignment:
| Q |
41 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggttcgactcgagtggtca---atgaggtccggtgaaggt |
137 |
Q |
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|||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||| | | ||||| | | ||||||| ||| ||||| |
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| T |
33582830 |
tatactttgaaaaagaatacagtaacttagcatttgaatatattctaactgaaattaaatggttcaatttgagtgattaatgatgaggttcgggaaaggt |
33582929 |
T |
|
| Q |
138 |
caagttgattggaagtaccaagttcaaaacctggttg |
174 |
Q |
| |
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||||| |||||||||||||||| |||| |||||||| |
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| T |
33582930 |
caagtcaattggaagtaccaagtacaaatcctggttg |
33582966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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