View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_66 (Length: 237)
Name: NF5999_low_66
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21743577 - 21743798
Alignment:
| Q |
1 |
aacttgtagaaaccaaagttttcaataccttcgattttggaaccaaaccttgatctgtttaggttctatgttggaaagaatagaacactcacgaatcaat |
100 |
Q |
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| T |
21743577 |
aacttgcagaaaccaaagttttcaataccttcgattttggaaccaaaccttgatctgtttgggttcaatgttggaaagaataggacactcacgaatcaat |
21743676 |
T |
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| Q |
101 |
tgttgtcttctcatggaactaggcttaggacactcagcataaaccctttccaatgcttcaacttgttcagaagtatacctaacatatttccctgaatcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21743677 |
tgttgtcttctcatggaactaggcttaggacactcagcatacaccctttccaatgcttcaacttgttcagaagtatacctaacatatttccctgaatcta |
21743776 |
T |
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| Q |
201 |
gatgcttatcaatgcttccacc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21743777 |
gatgcttatcaatgcttccacc |
21743798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 11287516 - 11287679
Alignment:
| Q |
26 |
taccttcgattttggaaccaaaccttgatctgtttaggttctatgttggaaagaatagaacactcacgaatcaattgttgtcttctcatggaactaggct |
125 |
Q |
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| T |
11287516 |
taccttcggttttgaaaccaaactttgatctgtttaggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggct |
11287615 |
T |
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| Q |
126 |
taggacactcagcataaaccctttccaatgcttcaacttgttcagaagtatacctaacatattt |
189 |
Q |
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| T |
11287616 |
taggacattctgaataaactctctccaaagcttcaacttgttcaggagtgtacctcacatattt |
11287679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 40312900 - 40312752
Alignment:
| Q |
41 |
aaccaaaccttgatctgtttaggttctatgttggaaagaatagaacactcacgaatcaattgttgtcttctcatggaactaggcttaggacactcagcat |
140 |
Q |
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||||||||||||||||| ||||| || ||||||| |||| | ||||| ||||||| ||||| ||||||| |||||||||||||| || || ||| |
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| T |
40312900 |
aaccaaaccttgatctgcttaggctcaatgttggccagaaccgggcactcccgaatcagctgttgccttctcaatgaactaggcttagggcattccacat |
40312801 |
T |
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| Q |
141 |
aaaccctttccaatgcttcaacttgttcagaagtatacctaacatattt |
189 |
Q |
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| T |
40312800 |
aaaccttttccaaagcttcaatctgttcagcagtgtacctcacatattt |
40312752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 43511310 - 43511382
Alignment:
| Q |
24 |
aataccttcgattttggaaccaaaccttgatctgtttaggttctatgttggaaagaatagaacactcacgaat |
96 |
Q |
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| T |
43511310 |
aataccttctattttggaaccaaactttgatctgtttaggttcaatatgagagagaataggacactctcgaat |
43511382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 51354491 - 51354406
Alignment:
| Q |
25 |
ataccttcgattttggaaccaaaccttgatctgtttaggttctatgttggaaagaatagaacactcacgaatcaattgttgtcttc |
110 |
Q |
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|||||||| || ||||||||||| ||||||||||||||||| || | || ||||||| |||||| | ||| | ||||||||||| |
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| T |
51354491 |
ataccttctgttctggaaccaaactttgatctgtttaggttcaatatgagagagaataggacactctctaatgagttgttgtcttc |
51354406 |
T |
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