View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_low_67 (Length: 232)

Name: NF5999_low_67
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_low_67
NF5999_low_67
[»] chr2 (14 HSPs)
chr2 (19-220)||(30790621-30790822)
chr2 (19-220)||(30068551-30068752)
chr2 (28-217)||(30172359-30172548)
chr2 (29-212)||(30023435-30023618)
chr2 (29-212)||(30037079-30037262)
chr2 (29-212)||(30081841-30082024)
chr2 (29-212)||(30118504-30118687)
chr2 (29-212)||(30231217-30231400)
chr2 (36-212)||(30106574-30106750)
chr2 (28-217)||(30183637-30183826)
chr2 (28-214)||(30252436-30252622)
chr2 (28-217)||(30279899-30280088)
chr2 (37-212)||(30133212-30133387)
chr2 (28-217)||(30148058-30148247)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 30790822 - 30790621
Alignment:
Q  19 tgtcaagcattccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790822 tgtcaagcattccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatga 30790723  T
Q  119 gaatgcgtacgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctagaa 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790722 gaatgcgtacgatatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctagaa 30790623  T
Q  219 tt 220  Q
    ||    
T  30790622 tt 30790621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 30068752 - 30068551
Alignment:
Q  19 tgtcaagcattccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatga 118  Q
    |||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||  ||||| | ||| ||||||| |||||||||    
T  30068752 tgtcaaactttccatctgagacaattatctgctccaacatttggcaattactaatctcaagatgctgcaggtttacaagctctccagccattgaggatga 30068653  T
Q  119 gaatgcgtacgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctagaa 218  Q
    |||||| || |||||| ||| |||| |||||| |||||||||| |||||||||| ||||||||||| || | ||||||||||||||||||||||||||||    
T  30068652 gaatgcataggctatgctaccacatttgtcaattgtcaaactcctcaagttttgaatgcaagaatgccccgaaagtttgtcatcccacagtttcctagaa 30068553  T
Q  219 tt 220  Q
    ||    
T  30068552 tt 30068551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 30172548 - 30172359
Alignment:
Q  28 ttccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgta 127  Q
    |||||||||||||||| || ||||||||||||||||||||||||| | |||||| |||||  ||||| |  || | ||||||||||||||||||||||||    
T  30172548 ttccatctgagacaaagatgtcctccaacatttggcaattactaaactcaagatacttcaggtttacaagttctctagccactgaggatgagaatgcgta 30172449  T
Q  128 cgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctaga 217  Q
    |||||||  |  |||| |||||| |||||||||  ||| |||||| |||||| ||||||||||||| ||||||||||| ||||| |||||    
T  30172448 cgctatgccatcacatttgtcaattgtcaaacttctcatgttttgaatgcaaaaatgacctggaaggttgtcatcccaaagttttctaga 30172359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 30023618 - 30023435
Alignment:
Q  29 tccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtac 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||     
T  30023618 tccatctgagacaaatatgtcctccaacatttggcaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtat 30023519  T
Q  129 gctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
       ||| ||| |||| |||| | |||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30023518 ctcatgctaccacatttgtccattgtcaaactcttcaagttttgcatgcgagaatgactcagaagtttgtcatcccacagtttc 30023435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 30037079 - 30037262
Alignment:
Q  29 tccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtac 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||     
T  30037079 tccatctgagacaaatatgtcctccaacatttggcaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtat 30037178  T
Q  129 gctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
       ||| ||| |||| |||| | |||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30037179 ctcatgctaccacatttgtccattgtcaaactcttcaagttttgcatgcgagaatgactcagaagtttgtcatcccacagtttc 30037262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 30082024 - 30081841
Alignment:
Q  29 tccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtac 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||     
T  30082024 tccatctgagacaaatatttcctccaacatttggcaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtat 30081925  T
Q  129 gctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
       ||| ||| |||| |||| | |||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30081924 ctcatgctaccacatttgtccattgtcaaactcttcaagttttgcatgcgagaatgactcagaagtttgtcatcccacagtttc 30081841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 30118504 - 30118687
Alignment:
Q  29 tccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtac 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||     
T  30118504 tccatctgagacaaatatgtcctccaacatttggcaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtat 30118603  T
Q  129 gctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
       ||| ||| |||| |||| | |||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30118604 ctcatgctaccacatttgtccattgtcaaactcttcaagttttgcatgcgagaatgactcagaagtttgtcatcccacagtttc 30118687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 30231217 - 30231400
Alignment:
Q  29 tccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtac 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||     
T  30231217 tccatctgagacaaatatgtcctccaacatttggcaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtat 30231316  T
Q  129 gctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
       ||| ||| |||| |||| | |||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30231317 ctcatgctaccacatttgtccattgtcaaactcttcaagttttgcatgcgagaatgactcagaagtttgtcatcccacagtttc 30231400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 30106574 - 30106750
Alignment:
Q  36 gagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtacgctatgt 135  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||    |||     
T  30106574 gagacaaatatgtcctccaacatttggcaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtatctcatgc 30106673  T
Q  136 tacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
    ||| |||| |||| | |||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30106674 taccacatttgtctattgtcaaactcttcaagttttgcatgcgagaatgactacgaagtttgtcatcccacagtttc 30106750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 30183637 - 30183826
Alignment:
Q  28 ttccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgta 127  Q
    ||||||| | |||||||||  |||||||||||||||||||||||||| |||| |||||||  ||||| || || |  || || ||||||||||||  | |    
T  30183637 ttccatcagggacaaatatgccctccaacatttggcaattactaatcacaagttgcttcaggtttacaaattctctggcgaccgaggatgagaatatgca 30183736  T
Q  128 cgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctaga 217  Q
     |||||||||  ||||| ||| | |||||||||  ||||||||||||| |||||| |||  |||||||| ||||||||||||||||||||    
T  30183737 tgctatgttatcacatccgtctattgtcaaacttctcaagttttgcatccaagaacgactcggaagtttatcatcccacagtttcctaga 30183826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 30252622 - 30252436
Alignment:
Q  28 ttccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgta 127  Q
    ||||||| |||| ||||||  |||||||||||||||||||||||||| | |||| || ||| ||||| |  ||   |||||||||||||||||||||  |    
T  30252622 ttccatcagagataaatatgccctccaacatttggcaattactaatctcgagatactccaagtttacaagttctttagccactgaggatgagaatgcaca 30252523  T
Q  128 cgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcct 214  Q
    ||| |||  || |||| |||||| |||||||||||| | |||| | || ||||||||||| ||||| ||||||||||||| ||||||    
T  30252522 cgcaatgccaccacatttgtcaattgtcaaactcttgatgtttcgaatacaagaatgaccgggaaggttgtcatcccacaatttcct 30252436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 30280088 - 30279899
Alignment:
Q  28 ttccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgta 127  Q
    ||||||| |||||||||||||| ||||||||  |||||||| ||||  ||||||  | ||  ||||| |  || | |||||||||||| || |||| |||    
T  30280088 ttccatcggagacaaatatctcttccaacatcaggcaattattaatgccaagatattgcaggtttacaagttctctagccactgaggacgaaaatgtgta 30279989  T
Q  128 cgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctaga 217  Q
     |||||| ||| |||| ||||||  ||||||||| |||||||||| |||||||||||||||||||  ||||||||||||| | |||||||    
T  30279988 agctatgctaccacatttgtcaatcgtcaaactcctcaagttttgaatgcaagaatgacctggaaagttgtcatcccacaatctcctaga 30279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 30133212 - 30133387
Alignment:
Q  37 agacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgtacgctatgtt 136  Q
    |||||||||| |||||||||| |||| |||||||||||  ||||   ||||  ||||| |  || | ||| ||||||||||||||||||||    ||| |    
T  30133212 agacaaatatgtcctccaacaattggaaattactaatcttaagagatttcaggtttacaagttctctagcaactgaggatgagaatgcgtatctcatgct 30133311  T
Q  137 acaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttc 212  Q
    || |||| |||||| | |||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  30133312 accacatttgtcaattttcaaactcttcaagttttgcatgcgagaatgactcagaagtttgtcatcccacagtttc 30133387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 30148247 - 30148058
Alignment:
Q  28 ttccatctgagacaaatatctcctccaacatttggcaattactaatcgcaagatgcttcaaatttaccaactcgccagccactgaggatgagaatgcgta 127  Q
    ||||||| |||||||||||||| ||||||||  |||||||| ||||  ||||||  | ||  ||||| |  || | ||| |||||||| || |||| |||    
T  30148247 ttccatcggagacaaatatctcttccaacatcaggcaattattaatgccaagatattgcaggtttacaagttctctagcaactgaggacgaaaatgtgta 30148148  T
Q  128 cgctatgttacaacatctgtcaagtgtcaaactcttcaagttttgcatgcaagaatgacctggaagtttgtcatcccacagtttcctaga 217  Q
     |||||| ||| |||| ||||||  ||||||||| |||||||||| |||||||||||||||||||  |||| |||| ||| | |||||||    
T  30148147 agctatgctaccacatttgtcaatcgtcaaactcctcaagttttgaatgcaagaatgacctggaaagttgttatcctacaatctcctaga 30148058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University