View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_7 (Length: 554)
Name: NF5999_low_7
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 554
Target Start/End: Complemental strand, 3884733 - 3884191
Alignment:
| Q |
11 |
cacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
110 |
Q |
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| T |
3884733 |
cacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
3884634 |
T |
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| Q |
111 |
cagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
210 |
Q |
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| T |
3884633 |
cagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggtg-ttcttctggtggtattgttttcattcttattcttctctt |
3884535 |
T |
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| Q |
211 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttgtgataaaactaagtgttgaatcttgaactt |
310 |
Q |
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| T |
3884534 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttatgataaaactaagtgttgaatcttgaactt |
3884435 |
T |
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| Q |
311 |
aagatgaatttatgttttaagctaattattgtctgctttcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagcaaaa |
410 |
Q |
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| T |
3884434 |
aagatgaatttatgttttaagctaattattgtctgcgctcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagctaaa |
3884335 |
T |
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| Q |
411 |
tctattaagaacaattatcttttacaatctcaagtgaactaaaactattgtcatgatttaattttcttgtgattgcaataaaacagaagcaatataactg |
510 |
Q |
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| T |
3884334 |
tctattaagaacaattatcttttacaatctcaagtgaactaaaactattgtcatgatttaattttcttgtgattgcaataaaacagaagcaatataactg |
3884235 |
T |
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| Q |
511 |
agaaaatcagcgcataaaaaattatactgcaaaaagaaccaaat |
554 |
Q |
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| T |
3884234 |
agaaaatcagcgcataaaaaattatactgcaaaaagaaccaaat |
3884191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 3874205 - 3873957
Alignment:
| Q |
11 |
cacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
110 |
Q |
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| T |
3874205 |
cacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttttgtattggttttagtcatatctttat |
3874106 |
T |
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| Q |
111 |
cagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
210 |
Q |
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| T |
3874105 |
cagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
3874006 |
T |
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| Q |
211 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgc |
262 |
Q |
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| T |
3874005 |
tcttgttttgaagtgtaaagcatct---ttgtaatgtaagaaccttgcatgc |
3873957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 454
Target Start/End: Complemental strand, 3873352 - 3873218
Alignment:
| Q |
325 |
ttttaagctaattattgtctgctttcaaagtacaat-----gtatttaagttaataaacttgatattttcatggtagaaatattagcaaaatctattaag |
419 |
Q |
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| T |
3873352 |
ttttaagctaattagtgtcttctttgaaagtacaataatgtgtatttaagctaataaacttcatattttcttggtagaaatatttgtaaaatctatttag |
3873253 |
T |
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| Q |
420 |
aacaattatcttttacaatctcaagtgaactaaaa |
454 |
Q |
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| T |
3873252 |
agcaattatcttttcaaatcgcaattgaaccaaaa |
3873218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 480
Target Start/End: Complemental strand, 16323792 - 16323726
Alignment:
| Q |
414 |
attaagaacaattatcttttacaatctcaagtgaactaaaactattgtcatgatttaattttcttgt |
480 |
Q |
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| T |
16323792 |
attaagaacaattatccttcacaagctcaagagaatcaaaactattttcatgattgaattatcttgt |
16323726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 48453561 - 48453465
Alignment:
| Q |
139 |
gtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct |
235 |
Q |
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| T |
48453561 |
gtttgatcgttactggattcatagagtttgtggctcctcaggcggtatttttgtgattattactgttctttttcttattttgaagtggaaatcatct |
48453465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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