View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_70 (Length: 223)
Name: NF5999_low_70
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 778814 - 778618
Alignment:
| Q |
12 |
catcatcaagatccattagcatcatcgcactttaagctccaactaccatcatcaaaaacacaatgtcatcattatccttaccctccaactaccaattata |
111 |
Q |
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| T |
778814 |
catcatcaagatccattagcatcattgcactttaagctccaactaccatcatcaaaaacacaatgtcatcattatccttaccctccaactaccaattata |
778715 |
T |
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| Q |
112 |
tctctttctcaaggctaaataacaaccaaaatattaggctcctcagctttgatgataaagccatcaaaaccaacaaagtaagcttgctggttgagaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
778714 |
tctctttctcaaggctaaataacaaccaaaatattaggctcctcagctttgatgataaagccatcaacaccaacaaagtaagcttgttggttgagaa |
778618 |
T |
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