View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_low_75 (Length: 212)

Name: NF5999_low_75
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_low_75
NF5999_low_75
[»] chr4 (5 HSPs)
chr4 (14-212)||(39271979-39272180)
chr4 (59-107)||(20119952-20120000)
chr4 (32-78)||(19195195-19195240)
chr4 (38-107)||(43093529-43093598)
chr4 (35-67)||(21107691-21107723)
[»] chr7 (4 HSPs)
chr7 (39-103)||(17285051-17285115)
chr7 (53-103)||(37775983-37776033)
chr7 (52-104)||(27531847-27531900)
chr7 (59-104)||(44172897-44172942)
[»] chr6 (5 HSPs)
chr6 (39-99)||(31430267-31430327)
chr6 (39-103)||(4859121-4859185)
chr6 (45-90)||(1893390-1893435)
chr6 (39-92)||(17422274-17422327)
chr6 (55-107)||(6284665-6284717)
[»] chr3 (4 HSPs)
chr3 (35-119)||(19323440-19323524)
chr3 (49-101)||(34409352-34409404)
chr3 (52-101)||(18180539-18180588)
chr3 (59-103)||(40150579-40150623)
[»] chr5 (4 HSPs)
chr5 (55-107)||(30267527-30267579)
chr5 (38-92)||(7089112-7089166)
chr5 (53-99)||(39424642-39424688)
chr5 (35-67)||(17117688-17117720)
[»] chr1 (1 HSPs)
chr1 (45-103)||(31667418-31667476)
[»] chr8 (3 HSPs)
chr8 (35-99)||(1979395-1979459)
chr8 (59-107)||(6252497-6252545)
chr8 (45-101)||(37225753-37225809)
[»] chr2 (1 HSPs)
chr2 (39-103)||(43886581-43886645)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 39272180 - 39271979
Alignment:
Q  14 atatatagacaggcgtgagtgcacgacactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagtttcgtg 113  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  39272180 atatatagacaagtgtgagtgcacgacactaacatgtcaacaccaataataattcgagaaaatgatatgattaaacgtaatcacatgcgttagtttcgtg 39272081  T
Q  114 tcacggtgtaagacacttacatgtatcagacactagacatgtccttgatcagaaatgtcg---ctacagagataacaaagaacaatattattccttatcc 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||    
T  39272080 tcacggtgtaagacacttacatgtatcagacactagacacgtccttgatcagaaatgtcgatactacagagataacaaggaacaatattattccttatcc 39271981  T
Q  211 gc 212  Q
    ||    
T  39271980 gc 39271979  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 20119952 - 20120000
Alignment:
Q  59 ataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagt 107  Q
    ||||||||| |||||||||| || ||| |||||||||||||||||||||    
T  20119952 ataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagt 20120000  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 19195240 - 19195195
Alignment:
Q  32 gtgcacgacactaacatgtcaacaccaataataattcgagaaaatga 78  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||||    
T  19195240 gtgcacgaaactaacatgtca-caccaataataatttgagaaaatga 19195195  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 43093598 - 43093529
Alignment:
Q  38 gacactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagt 107  Q
    |||||| ||| ||||||||| ||||||||| || ||||||  || ||| |||||||||||||||| ||||    
T  43093598 gacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtgatagt 43093529  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 21107723 - 21107691
Alignment:
Q  35 cacgacactaacatgtcaacaccaataataatt 67  Q
    ||||||||||||||||||||||| |||||||||    
T  21107723 cacgacactaacatgtcaacaccgataataatt 21107691  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 17285051 - 17285115
Alignment:
Q  39 acactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgt 103  Q
    ||||||||| ||||||||||||||||||| |||| |||||||| ||| ||| |||||||||||||    
T  17285051 acactaacaagtcaacaccaataataatttgagagaatgatataattcaatttaatcacatgtgt 17285115  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 37775983 - 37776033
Alignment:
Q  53 acaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgt 103  Q
    |||||| || ||||| |||||||||| || |||||||||||||||||||||    
T  37775983 acaccagtagtaatttgagaaaatgacataattaaatgtaatcacatgtgt 37776033  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 27531900 - 27531847
Alignment:
Q  52 aacaccaataataattcgagaaaatgata-tgattaaatgtaatcacatgtgtt 104  Q
    |||||||||||||||| || ||||||| | |||||||||||||||| |||||||    
T  27531900 aacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgtt 27531847  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 44172942 - 44172897
Alignment:
Q  59 ataataattcgagaaaatgatatgattaaatgtaatcacatgtgtt 104  Q
    ||||||||| |||||||||| || ||| ||||||||||||||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatcacatgtgtt 44172897  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 31430267 - 31430327
Alignment:
Q  39 acactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacat 99  Q
    ||||| |||||||||||||||||| | || |||||||||| ||||||||||||||||||||    
T  31430267 acacttacatgtcaacaccaataaaattttgagaaaatgacatgattaaatgtaatcacat 31430327  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 4859185 - 4859121
Alignment:
Q  39 acactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgt 103  Q
    ||||||||||||| ||||||||||||||| |||||||||| || ||  |||||||||||| ||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaatcacacgtgt 4859121  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 1893435 - 1893390
Alignment:
Q  45 acatgtcaacaccaataataattcgagaaaatgatatgattaaatg 90  Q
    |||||||| |||||||||||||| ||||||||||||| ||| ||||    
T  1893435 acatgtcatcaccaataataatttgagaaaatgatataattcaatg 1893390  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 17422327 - 17422274
Alignment:
Q  39 acactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgta 92  Q
    ||||||||| ||| ||||| ||||||||| ||||||||||||| ||| ||||||    
T  17422327 acactaacacgtcgacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6284717 - 6284665
Alignment:
Q  55 accaataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagt 107  Q
    |||| |||||||| |||||||||| || ||| ||| |||||||||||||||||    
T  6284717 accattaataatttgagaaaatgacataattgaatttaatcacatgtgttagt 6284665  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 19323524 - 19323440
Alignment:
Q  35 cacgacactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagtttcgtgtcacgg 119  Q
    ||||||||||||||||| ||||  ||| ||||| |||||||||| || ||| ||| ||||||||||||| ||| ||| |||||||    
T  19323524 cacgacactaacatgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacatgtgtaagtgtcgcgtcacgg 19323440  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 34409404 - 34409352
Alignment:
Q  49 gtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgt 101  Q
    ||||||||| |||||| ||||||||||||| || ||| |||||||||||||||    
T  34409404 gtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcacatgt 34409352  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 18180539 - 18180588
Alignment:
Q  52 aacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgt 101  Q
    |||| ||||||||||| |||||||||| || |||||||||||| ||||||    
T  18180539 aacatcaataataatttgagaaaatgaaataattaaatgtaattacatgt 18180588  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 40150623 - 40150579
Alignment:
Q  59 ataataattcgagaaaatgatatgattaaatgtaatcacatgtgt 103  Q
    ||||||||| ||||||||||||| ||| |||||||||| ||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatcatatgtgt 40150579  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 30267579 - 30267527
Alignment:
Q  55 accaataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagt 107  Q
    |||| |||||||| |||||||| |||| |||||||||||||||| ||||||||    
T  30267579 accagtaataatttgagaaaataatataattaaatgtaatcacaagtgttagt 30267527  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 7089166 - 7089112
Alignment:
Q  38 gacactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgta 92  Q
    ||||||||||| ||||||| |||||||||| |||||||||| | |||| ||||||    
T  7089166 gacactaacatatcaacactaataataatttgagaaaatgacaggattcaatgta 7089112  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 39424642 - 39424688
Alignment:
Q  53 acaccaataataattcgagaaaatgatatgattaaatgtaatcacat 99  Q
    ||||||||||||||| |||||||||| |||||| |||||| ||||||    
T  39424642 acaccaataataatttgagaaaatgacatgattcaatgtattcacat 39424688  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 17117720 - 17117688
Alignment:
Q  35 cacgacactaacatgtcaacaccaataataatt 67  Q
    |||||||||||||||||||||||| ||||||||    
T  17117720 cacgacactaacatgtcaacaccagtaataatt 17117688  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 31667418 - 31667476
Alignment:
Q  45 acatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgt 103  Q
    ||||||||||||   ||||||||  ||||||||| || |||||||||||||||||||||    
T  31667418 acatgtcaacactggtaataattttagaaaatgacataattaaatgtaatcacatgtgt 31667476  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 1979395 - 1979459
Alignment:
Q  35 cacgacactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacat 99  Q
    |||| |||||||| |||||||||  |||||||| |||||||| |  | |||||||||||||||||    
T  1979395 cacgccactaacaagtcaacaccggtaataatttgagaaaattaattaattaaatgtaatcacat 1979459  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 6252545 - 6252497
Alignment:
Q  59 ataataattcgagaaaatgatatgattaaatgtaatcacatgtgttagt 107  Q
    ||||||||| |||||||| || | ||||||||||||||||| |||||||    
T  6252545 ataataatttgagaaaataatttaattaaatgtaatcacatttgttagt 6252497  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 37225809 - 37225753
Alignment:
Q  45 acatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgt 101  Q
    ||||||| ||||||||||||||| |||||||| | || ||| |||||||||| ||||    
T  37225809 acatgtctacaccaataataatttgagaaaataacataattcaatgtaatcatatgt 37225753  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 43886581 - 43886645
Alignment:
Q  39 acactaacatgtcaacaccaataataattcgagaaaatgatatgattaaatgtaatcacatgtgt 103  Q
    ||||||||| ||| |||||| ||||||||  ||| |||||  |||||||| ||||||||||||||    
T  43886581 acactaacacgtcgacaccagtaataatttaagataatgaattgattaaacgtaatcacatgtgt 43886645  T

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