View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_low_76 (Length: 211)

Name: NF5999_low_76
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_low_76
NF5999_low_76
[»] chr1 (1 HSPs)
chr1 (48-116)||(9018541-9018609)
[»] chr3 (3 HSPs)
chr3 (47-114)||(19744681-19744748)
chr3 (47-114)||(19762896-19762963)
chr3 (13-49)||(38071287-38071323)
[»] chr5 (3 HSPs)
chr5 (48-116)||(25650221-25650289)
chr5 (13-49)||(17592710-17592746)
chr5 (13-49)||(31158333-31158369)
[»] scaffold0308 (2 HSPs)
scaffold0308 (13-49)||(5195-5231)
scaffold0308 (13-49)||(14258-14294)
[»] scaffold0122 (1 HSPs)
scaffold0122 (13-49)||(12156-12192)
[»] scaffold0066 (1 HSPs)
scaffold0066 (13-49)||(34197-34233)
[»] chr8 (4 HSPs)
chr8 (13-49)||(257447-257483)
chr8 (13-49)||(658437-658473)
chr8 (13-49)||(844173-844209)
chr8 (13-49)||(7682946-7682982)
[»] chr7 (1 HSPs)
chr7 (13-49)||(48009026-48009062)
[»] chr2 (3 HSPs)
chr2 (13-49)||(19631099-19631135)
chr2 (13-49)||(19828000-19828036)
chr2 (13-49)||(38121420-38121456)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 9018541 - 9018609
Alignment:
Q  48 aactagtgtgagacccgtgtcgatgccacgagctcataaataattgtggcggtcgtcaattaatcaagc 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  9018541 aactagtgtgagacccgtgtcgatgccacgggctcataaataattgtagcggtcgtcaattaatcaagc 9018609  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 19744681 - 19744748
Alignment:
Q  47 aaactagtgtgagacccgtgtcgatgccacgagctcataaataattgtggcggtcgtcaattaatcaa 114  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  19744681 aaactagtgtgagacccgtgtcgatgccacgggcttataaataattgtagcggtcgtcaattaatcaa 19744748  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 19762896 - 19762963
Alignment:
Q  47 aaactagtgtgagacccgtgtcgatgccacgagctcataaataattgtggcggtcgtcaattaatcaa 114  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  19762896 aaactagtgtgagacccgtgtcgatgccacgggcttataaataattgtagcggtcgtcaattaatcaa 19762963  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 38071323 - 38071287
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  38071323 aatatgtataataaatagggacatgtatgtaaagaaa 38071287  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 25650289 - 25650221
Alignment:
Q  48 aactagtgtgagacccgtgtcgatgccacgagctcataaataattgtggcggtcgtcaattaatcaagc 116  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  25650289 aactagtgtgagacccgtgccgatgccacgggctcataaataattgtagcggtcgtcaattaattaagc 25650221  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 17592710 - 17592746
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  17592710 aatatgtataataaatagggacatgtatgtaaagaaa 17592746  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 31158333 - 31158369
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  31158333 aatatgtataataaatagggacatgtatgtaaagaaa 31158369  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 5195 - 5231
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  5195 aatatgtataataaatagggacatgtatgtaaagaaa 5231  T

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Target: scaffold0308; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 14258 - 14294
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  14258 aatatgtataataaatagggacatgtatgtaaagaaa 14294  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 12192 - 12156
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  12192 aatatgtataataaatagggacatgtatgtaaagaaa 12156  T

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Target: scaffold0066 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 34233 - 34197
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  34233 aatatgtataataaatagggacatgtatgtaaagaaa 34197  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 257447 - 257483
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  257447 aatatgtataataaatagggacatgtatgtaaagaaa 257483  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 658473 - 658437
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  658473 aatatgtataataaatagggacatgtatgtaaagaaa 658437  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 844209 - 844173
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  844209 aatatgtataataaatagggacatgtatgtaaagaaa 844173  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 7682946 - 7682982
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  7682946 aatatgtataataaatagggacatgtatgtaaagaaa 7682982  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 48009062 - 48009026
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  48009062 aatatgtataataaatagggacatgtatgtaaagaaa 48009026  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 19631099 - 19631135
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  19631099 aatatgtataataaatagggacatgtatgtaaagaaa 19631135  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 19828000 - 19828036
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  19828000 aatatgtataataaatagggacatgtatgtaaagaaa 19828036  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 38121420 - 38121456
Alignment:
Q  13 aatatttataataaataggtacatgtatgtaaagaaa 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  38121420 aatatgtataataaatagggacatgtatgtaaagaaa 38121456  T

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