View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6000_high_2 (Length: 496)
Name: NF6000_high_2
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6000_high_2 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 68 - 490
Target Start/End: Complemental strand, 49825515 - 49825101
Alignment:
| Q |
68 |
agatttgattgaggcaaacagtcaggtaaattatgatcactttggttatatcnnnnnnnatattgtgatacgatcgtatttttatgcatgttggtaattt |
167 |
Q |
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| T |
49825515 |
agatttgattgaggcaaacagtcaggtaaattatgatcactttggttatagcttttt---tattgtgatatgattgtatttttatgcatgttattaattt |
49825419 |
T |
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| Q |
168 |
ggagtgcgtttcatttgatcagggtaaaccctcaagcgagcgagtatccaaatgaatttgatattgttgttggaaaacaaatgctatttaaggttggaat |
267 |
Q |
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| T |
49825418 |
ggagtgcgttttatttgatcagggtaaaccctcaagcgag----tatcccaatgagttggatatttttgttggaaaacaaatgctatttaaggttgaaat |
49825323 |
T |
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| Q |
268 |
tacggatgggaacttaatgcataattggcgcaactatgcggtcaaaaggacatctgatgaatcaatttgtgactcttcacaacattacaatgacgaatat |
367 |
Q |
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| T |
49825322 |
tacggatgggaacttaatgcataattggcgcaactatgctgtcaaaaggacatctgatgaatcaatttgtgactcttcacaacattacaatggcgaatat |
49825223 |
T |
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| Q |
368 |
cctgctgatctggatttgttcatagacnnnnnnnntgttgtttaaagttgagataactgatggcaacttgaagcatggatggcgtaactaagctgtgaag |
467 |
Q |
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| T |
49825222 |
cctgctgatctggatttgttcatagac-aaaaaaatgttgtttaaagtcgagataactgatggcaacttgaagcatggatggcgtaactaagttgtgaag |
49825124 |
T |
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| Q |
468 |
cgggtgtatgatgatgtccatct |
490 |
Q |
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| T |
49825123 |
cgggtgtctgatgatgtcgatct |
49825101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 49825594 - 49825560
Alignment:
| Q |
18 |
acaaggtgcacattgaagtgatggacaacactggt |
52 |
Q |
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| T |
49825594 |
acaaggtgcacattcaagtgatggacaacactggt |
49825560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 232573 - 232658
Alignment:
| Q |
234 |
ttgttggaaaacaaatgctatttaaggttggaattacggatgggaacttaatgcata-attggcgcaactatgcggtcaaaaggac |
318 |
Q |
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| T |
232573 |
ttgttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggac |
232658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 14584802 - 14584717
Alignment:
| Q |
234 |
ttgttggaaaacaaatgctatttaaggttggaattacggatgggaacttaatgcata-attggcgcaactatgcggtcaaaaggac |
318 |
Q |
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| T |
14584802 |
ttgttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggac |
14584717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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