View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6000_low_11 (Length: 302)
Name: NF6000_low_11
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6000_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 29052362 - 29052495
Alignment:
| Q |
147 |
tcaatcacaaattttattgctactgtaggatttctgaattcggatacttacagattcacccaccatagtccatagcaaatatacaaattgcaaaatatat |
246 |
Q |
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| T |
29052362 |
tcaatcacaaattttattgctactgtaggatttctgaattcggatacttagagattcacc----atagtccatagcaaatatacaaattgcaaaatatat |
29052457 |
T |
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| Q |
247 |
gcctccctaaaaatacaagatgtctattgtgttagaga |
284 |
Q |
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| T |
29052458 |
gcctccctaaaaatacaagatgtatattgtgttagaga |
29052495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 29052230 - 29052333
Alignment:
| Q |
15 |
gaccgtgaccaaaaaataattcccagtaagcctattgatagagtgatagagatgaggcctttaaaagagtggattatgtagaattggtcagttatagatt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052230 |
gaccgtgaccaaaaaataattcccagtaagcctattgatagagggatagagatgaggcctttaaaagagtggattatgtagaattggtcagttatagatt |
29052329 |
T |
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| Q |
115 |
agtc |
118 |
Q |
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|||| |
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| T |
29052330 |
agtc |
29052333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 29059008 - 29059101
Alignment:
| Q |
19 |
gtgaccaaaaaataattcccagtaagcctattgatagagtgatagagatgaggcctttaaaagagtggattatgtagaattggtcagttatagattag |
116 |
Q |
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||||||||||||||||| | |||||||||||||||||| || ||||| |||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
29059008 |
gtgaccaaaaaataattacttgtaagcctattgatagagggacagagac----ccttcaaaagagtgaattatgtagaattggtcagttatagattag |
29059101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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