View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6000_low_12 (Length: 271)
Name: NF6000_low_12
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6000_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 12677113 - 12677365
Alignment:
| Q |
5 |
ttcagaaaggtagcctgtgtcagagctattatctatcgcaacaagttaactcaactccaatgagccggttaatgcgtttatgaaagttgtgatctcaagg |
104 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
12677113 |
ttcagaaaggtagtctgtgtcggagctattatctatcgcatcaagttaactcaactccaatgggccggttaatgcgcttatgaaaattgtgatcttaagg |
12677212 |
T |
|
| Q |
105 |
ttctagcacaaaccataaactcctaatcgtatcatctaatgatagcatctattcatgaaatagagttttgagacctacatatatannnnnnnnnaatgga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12677213 |
ttctagcacaaaccataaactcctaatcgtatcatctaatgatagcatctattcatgaaatagagttttgagacctacatatata--cttttttaatgga |
12677310 |
T |
|
| Q |
205 |
agaaatcgaacttgtacaatacttacgccatgtgcatcattgcatcaactatttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12677311 |
agaaatcgaacttgtacaatacttacgccatgtgcatcattgcatcaactatttg |
12677365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University