View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6000_low_16 (Length: 240)
Name: NF6000_low_16
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6000_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 55061109 - 55060898
Alignment:
| Q |
12 |
atgaacttgaagaatctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttt-atagcga |
110 |
Q |
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| T |
55061109 |
atgaacttgaagaatctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttttatagcga |
55061010 |
T |
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| Q |
111 |
taattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggttttcgacc |
210 |
Q |
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| T |
55061009 |
gaattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttactgaagataaactttttgttgtcagagatccttttggttttcgacc |
55060910 |
T |
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| Q |
211 |
tctggttatggg |
222 |
Q |
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|||||||||||| |
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| T |
55060909 |
tctggttatggg |
55060898 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 27357275 - 27357082
Alignment:
| Q |
29 |
ggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagaccttttatagcgataattgttgaagcgtgtg |
128 |
Q |
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||||| ||||| |||||||||||||||||||||||| | |||||| | ||||| |||||||| |||||||||||||| | ||||||||| || |||| |
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| T |
27357275 |
ggttcgatttttaacactacttctgatactgaagttgttcttcatttgattgctacttcaaagcatagaccttttattttaagaattgttgatgcatgtg |
27357176 |
T |
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| Q |
129 |
aaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggttttcgacctctggttatggg |
222 |
Q |
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| T |
27357175 |
agaagcttgaaggtgcttattcgattgtgtttgttactgaggataagcttgttgctgtgagggatccatttgggtttaggcctttggttatggg |
27357082 |
T |
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