View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6000_low_17 (Length: 237)

Name: NF6000_low_17
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6000_low_17
NF6000_low_17
[»] chr5 (2 HSPs)
chr5 (17-88)||(12598476-12598547)
chr5 (163-214)||(12598622-12598673)
[»] chr8 (1 HSPs)
chr8 (17-75)||(3376545-3376603)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 12598476 - 12598547
Alignment:
Q  17 atcaaaattcaaaaaggtaaatatgtttaagaaataacagctcggtataagatgaagattaggaagctaatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12598476 atcaaaattcaaaaaggtaaatatgtttaagaaataacagctcggtataagatgaagattaggaagctaatt 12598547  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 12598622 - 12598673
Alignment:
Q  163 gcactgatataagtatcaaaaatacttcatttcacttctatatcacaagtct 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12598622 gcactgatataagtataaaaaatacttcatttcacttctatatcacaagtct 12598673  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 3376603 - 3376545
Alignment:
Q  17 atcaaaattcaaaaaggtaaatatgtttaagaaataacagctcggtataagatgaagat 75  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  3376603 atcaaaattctaaaaggtaaatatgtttaacaaataacagctcggtataagataaagat 3376545  T

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