View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6000_low_18 (Length: 234)
Name: NF6000_low_18
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6000_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 528134 - 527933
Alignment:
| Q |
15 |
aatatgaaagatgttgttagcgaataattaaggatgatttaatttaatgtacttacacgataaaagttaatcataaatgttggatcattattttaaattt |
114 |
Q |
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| T |
528134 |
aatatgaaagatgttgttagcgaataattaaggatgatttaatttaatgtacttacacggtaaaagttaatcataaatgttggatcattatttttaattt |
528035 |
T |
|
| Q |
115 |
tttgcagggcatatctattttgaaaatcgtaataaatgatgaggtacctctttcctaaggagagcattctccagtcttagctgctgctcctcatgtgaca |
214 |
Q |
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| T |
528034 |
tttgcagggcatatctattttgaaaatcgtaataaatgatgaggtacctctttcctaaggagagcattctccagtcttagctgctgctcctcatgtgaca |
527935 |
T |
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| Q |
215 |
tt |
216 |
Q |
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|| |
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| T |
527934 |
tt |
527933 |
T |
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