View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6000_low_3 (Length: 489)
Name: NF6000_low_3
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6000_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Original strand, 37565406 - 37565861
Alignment:
| Q |
16 |
atgttgctggagcattatcactgaattctatgttccaactagcccaaatactatacttgagcttggttatgtagacatcaacaactagttttgatttgga |
115 |
Q |
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| T |
37565406 |
atgttgctggagcattatcactaaattctatgttccaactagcccaaatactatacttgagcttggttatgtagacatcaacaactagttttgatttgga |
37565505 |
T |
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| Q |
116 |
gcattttatgtataactcttgtaccgatgttttgatttagaatgctagtgcagatgcagtgtactcagccaagactggttatcaacaacttgggacaaga |
215 |
Q |
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| T |
37565506 |
gcattttatgtataactcttgtatcgatattttgatttagaatgctagtgcagatgcagtgtactcagcaaagactggttatcaacaacttgggacaaga |
37565605 |
T |
|
| Q |
216 |
gttacaagacggtggttattgagtcagactccaaaatgtttttggatcttctcgttgcaaccactccttagtttcatccccatgtacctctcattgacag |
315 |
Q |
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| T |
37565606 |
gttacaagacggtggttattgagtccgactccaaaatgtttttggatcttctcgttgcaaccactccttagtttcatccccatgtacctctcattgacag |
37565705 |
T |
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| Q |
316 |
tattgtagacttatgtcttgtgaagtattgacatagaaacagacattgaaaatgacatgattgactgcaatcgcatacatcaattcagacgctgacacac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37565706 |
tattgtagacttatgtcttgtgaagtattgacatagaaacagacattgaaaatgacatgattgactgcaatcgcatacatcaattcagacgctgacacac |
37565805 |
T |
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| Q |
416 |
gtttcggacactaagcacggcattgattagaagcgccggtgctacatagcttatgt |
471 |
Q |
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| T |
37565806 |
gtttcagacactaagcacgtcattgattagaagcgccggtgctacatagcttatgt |
37565861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 37161528 - 37161416
Alignment:
| Q |
47 |
gttccaactagcccaaatactatacttgagcttggttatgtagacatcaacaactagttttgatttggagca-ttttatgtataactcttgtaccgatgt |
145 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| || | |||||||| |||| |
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| T |
37161528 |
gttccaactagcccaaatattataccagagcttggttatgtagacatcagcaattagttttgatttggagcatttttatggatgaatcttgtactgatgc |
37161429 |
T |
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| Q |
146 |
tttgatttagaat |
158 |
Q |
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|||||||| |||| |
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| T |
37161428 |
tttgatttggaat |
37161416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 37206094 - 37205982
Alignment:
| Q |
47 |
gttccaactagcccaaatactatacttgagcttggttatgtagacatcaacaactagttttgatttggagca-ttttatgtataactcttgtaccgatgt |
145 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| || | |||||||| |||| |
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| T |
37206094 |
gttccaactagcccaaatattataccagagcttggttatgtagacatcagcaattagttttgatttggagcatttttatggatgaatcttgtactgatgc |
37205995 |
T |
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| Q |
146 |
tttgatttagaat |
158 |
Q |
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|||||||| |||| |
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| T |
37205994 |
tttgatttggaat |
37205982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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