View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6000_low_4 (Length: 480)

Name: NF6000_low_4
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6000_low_4
NF6000_low_4
[»] chr2 (4 HSPs)
chr2 (60-274)||(17124260-17124473)
chr2 (377-470)||(17124571-17124664)
chr2 (165-270)||(42990152-42990257)
chr2 (29-61)||(17124198-17124230)
[»] chr1 (2 HSPs)
chr1 (152-268)||(5229489-5229605)
chr1 (377-468)||(5229724-5229815)
[»] chr4 (1 HSPs)
chr4 (378-468)||(52550543-52550633)
[»] chr8 (1 HSPs)
chr8 (166-253)||(5450729-5450816)
[»] chr5 (2 HSPs)
chr5 (192-255)||(8142421-8142484)
chr5 (33-77)||(27144484-27144528)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 17124260 - 17124473
Alignment:
Q  60 gtgtctgtggttcataggatagagcagagttttgccatttacattgatccacctagctcaatgatccagacaaaaacaaattctcatagataatgtttgt 159  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17124260 gtgtccgtggttcataggatagagcagagttttgccatttacattgatcc-cctagctcaatgattcagacaaaaacaaattctcatagataatgtttgt 17124358  T
Q  160 tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17124359 tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg 17124458  T
Q  260 aaaagtaataaatga 274  Q
    |||||||||||||||    
T  17124459 aaaagtaataaatga 17124473  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 377 - 470
Target Start/End: Original strand, 17124571 - 17124664
Alignment:
Q  377 cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17124571 cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg 17124664  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 42990257 - 42990152
Alignment:
Q  165 cagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaag 264  Q
    ||||||||||||||| | ||||| || ||||| || || ||| | ||||||||| | || ||||| ||||||||||||||||||||||| |  || ||||    
T  42990257 cagatgtggccagatcttatacagaaagctaaggaaggtggtttggatgtgattcagacttatgttttttggaatggacatgaaccttcacctggcaaag 42990158  T
Q  265 taataa 270  Q
    ||||||    
T  42990157 taataa 42990152  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 17124198 - 17124230
Alignment:
Q  29 gagaaaattacataattaagtgaaattatatgt 61  Q
    |||||||||||||||||||||| ||||||||||    
T  17124198 gagaaaattacataattaagtgtaattatatgt 17124230  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 5229489 - 5229605
Alignment:
Q  152 atgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaacct 251  Q
    |||||| || ||||||||||||||||| ||| | ||||||||||||||||||||  ||||||| ||| |||| ||||||||||||||||||||||| |||    
T  5229489 atgtttcttaatgcagatgtggccagacttatttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagcct 5229588  T
Q  252 tctcaaggaaaagtaat 268  Q
    ||||  ||||| |||||    
T  5229589 tctcctggaaatgtaat 5229605  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 468
Target Start/End: Original strand, 5229724 - 5229815
Alignment:
Q  377 cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta 468  Q
    ||||||||||| |||||||||||||||||||| |||||  ||||  | |  ||||||||||| ||||||||||| |||||||||||||||||    
T  5229724 cagtattacttcgaagatagatttgacttggtaaagtttgtcaagctagcacaacaagctggtctttatgttcacttgcgtattggtcccta 5229815  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 52550633 - 52550543
Alignment:
Q  378 agtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta 468  Q
    ||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| |||||||||||| | || |||||||||||    
T  52550633 agtattattttgaagataggtacgatttggttaagttcatcaaggtggtgcaacaagctgggctttatgttcatcttcgcattggtcccta 52550543  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 5450729 - 5450816
Alignment:
Q  166 agatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttc 253  Q
    |||||||||||||| | || || ||||||||||| |||||  | ||||||||| |||||||||| || ||||||||||||||||||||    
T  5450729 agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttc 5450816  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 8142484 - 8142421
Alignment:
Q  192 gctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctc 255  Q
    |||||||| |||||| | ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8142484 gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctc 8142421  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 27144484 - 27144528
Alignment:
Q  33 aaattacataattaagtgaaattatatgtgtctgtggttcatagg 77  Q
    |||| |||||||| |||| ||||||||||||||||| ||||||||    
T  27144484 aaatcacataatttagtgtaattatatgtgtctgtgcttcatagg 27144528  T

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