View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6000_low_6 (Length: 364)

Name: NF6000_low_6
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6000_low_6
NF6000_low_6
[»] chr3 (21 HSPs)
chr3 (1-354)||(13846020-13846373)
chr3 (1-354)||(2550194-2550547)
chr3 (1-354)||(1654604-1654957)
chr3 (1-354)||(7407473-7407826)
chr3 (1-336)||(2942949-2943286)
chr3 (1-331)||(1627688-1628019)
chr3 (5-296)||(9633219-9633510)
chr3 (41-224)||(28745043-28745226)
chr3 (5-296)||(2179959-2180251)
chr3 (1-105)||(36035317-36035421)
chr3 (60-170)||(27259356-27259467)
chr3 (1-90)||(16457314-16457403)
chr3 (1-93)||(26707887-26707979)
chr3 (1-178)||(35083004-35083187)
chr3 (44-218)||(36035535-36035712)
chr3 (1-69)||(1613217-1613285)
chr3 (1-89)||(5498506-5498594)
chr3 (179-289)||(16457159-16457269)
chr3 (167-223)||(25338850-25338906)
chr3 (1-44)||(27259474-27259517)
chr3 (5-93)||(27713419-27713507)
[»] chr8 (23 HSPs)
chr8 (1-354)||(45355831-45356184)
chr8 (1-354)||(25638835-25639188)
chr8 (1-351)||(28248802-28249147)
chr8 (1-333)||(19369649-19369982)
chr8 (1-333)||(19448476-19448809)
chr8 (1-333)||(19532267-19532600)
chr8 (2-328)||(25637673-25637999)
chr8 (1-305)||(5528771-5529076)
chr8 (1-327)||(18766945-18767273)
chr8 (1-229)||(17634315-17634543)
chr8 (1-297)||(29345459-29345756)
chr8 (1-221)||(14997649-14997870)
chr8 (5-223)||(6801674-6801898)
chr8 (1-292)||(5650725-5651017)
chr8 (6-222)||(6223434-6223652)
chr8 (109-292)||(12105496-12105680)
chr8 (246-328)||(27810171-27810253)
chr8 (2-229)||(6403622-6403847)
chr8 (1-69)||(29553657-29553725)
chr8 (1-117)||(31347377-31347493)
chr8 (5-229)||(5000711-5000935)
chr8 (7-91)||(31369088-31369172)
chr8 (67-154)||(29118484-29118572)
[»] chr4 (12 HSPs)
chr4 (1-354)||(43600295-43600648)
chr4 (1-333)||(1684691-1685024)
chr4 (1-346)||(47065762-47066106)
chr4 (1-346)||(53300379-53300725)
chr4 (2-229)||(1152073-1152300)
chr4 (41-293)||(27739554-27739807)
chr4 (5-229)||(37750838-37751058)
chr4 (1-170)||(21539175-21539343)
chr4 (4-88)||(4904125-4904209)
chr4 (1-105)||(24558963-24559067)
chr4 (1-88)||(4881054-4881141)
chr4 (5-49)||(48464072-48464116)
[»] chr7 (18 HSPs)
chr7 (1-350)||(4685126-4685475)
chr7 (1-333)||(9242223-9242556)
chr7 (5-345)||(10022156-10022486)
chr7 (5-298)||(20277131-20277428)
chr7 (1-187)||(26608423-26608611)
chr7 (142-284)||(19746791-19746933)
chr7 (2-190)||(26620973-26621162)
chr7 (1-223)||(26618955-26619175)
chr7 (1-113)||(26224938-26225050)
chr7 (1-113)||(26205375-26205487)
chr7 (131-220)||(3374556-3374646)
chr7 (1-118)||(30089763-30089880)
chr7 (6-229)||(8241630-8241851)
chr7 (5-81)||(16170303-16170379)
chr7 (2-75)||(27135958-27136031)
chr7 (240-294)||(3374646-3374700)
chr7 (5-93)||(16086519-16086607)
chr7 (245-289)||(2931840-2931884)
[»] chr6 (20 HSPs)
chr6 (1-354)||(15361743-15362096)
chr6 (1-354)||(16734833-16735186)
chr6 (1-225)||(11936615-11936839)
chr6 (1-225)||(11948595-11948819)
chr6 (1-333)||(17719461-17719795)
chr6 (1-333)||(12591861-12592194)
chr6 (1-333)||(14669082-14669418)
chr6 (1-333)||(6684122-6684461)
chr6 (5-192)||(10070687-10070873)
chr6 (2-89)||(29667899-29667986)
chr6 (1-153)||(1942597-1942750)
chr6 (2-180)||(23904243-23904423)
chr6 (1-104)||(9631123-9631227)
chr6 (1-70)||(23264499-23264568)
chr6 (1-117)||(4485521-4485637)
chr6 (1-64)||(15690466-15690529)
chr6 (1-70)||(30481231-30481300)
chr6 (245-289)||(10264033-10264077)
chr6 (1-93)||(34374853-34374947)
chr6 (1-69)||(27969921-27969989)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-351)||(6727-7077)
[»] chr5 (22 HSPs)
chr5 (1-338)||(5078799-5079136)
chr5 (1-333)||(17037571-17037902)
chr5 (5-182)||(7410856-7411033)
chr5 (109-333)||(23616553-23616778)
chr5 (109-333)||(23847950-23848175)
chr5 (174-338)||(7411534-7411700)
chr5 (1-154)||(19985023-19985177)
chr5 (1-221)||(31571057-31571283)
chr5 (1-113)||(23679469-23679581)
chr5 (1-113)||(23855230-23855342)
chr5 (1-149)||(12042099-12042249)
chr5 (2-105)||(37233061-37233164)
chr5 (1-147)||(30786295-30786441)
chr5 (1-65)||(31068971-31069034)
chr5 (164-221)||(38449831-38449888)
chr5 (4-69)||(42076078-42076143)
chr5 (1-69)||(9354393-9354461)
chr5 (1-69)||(9333565-9333633)
chr5 (134-215)||(10869817-10869900)
chr5 (2-69)||(40402013-40402080)
chr5 (4-49)||(10869468-10869513)
chr5 (188-229)||(42076256-42076297)
[»] chr2 (17 HSPs)
chr2 (1-229)||(31342560-31342788)
chr2 (1-333)||(15513695-15514026)
chr2 (1-346)||(30267031-30267375)
chr2 (5-228)||(44920989-44921212)
chr2 (1-200)||(7718213-7718412)
chr2 (5-221)||(7702461-7702678)
chr2 (260-354)||(31342451-31342545)
chr2 (1-220)||(24479180-24479400)
chr2 (6-223)||(22966558-22966775)
chr2 (245-346)||(44921419-44921518)
chr2 (1-218)||(27151092-27151304)
chr2 (1-225)||(40016619-40016840)
chr2 (2-114)||(11017486-11017598)
chr2 (1-69)||(41573421-41573489)
chr2 (143-229)||(26734904-26734992)
chr2 (260-296)||(22967005-22967041)
chr2 (1-112)||(26734776-26734887)
[»] scaffold0684 (1 HSPs)
scaffold0684 (1-333)||(486-819)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-333)||(40437-40770)
[»] chr1 (17 HSPs)
chr1 (1-305)||(51758781-51759083)
chr1 (2-218)||(13208641-13208858)
chr1 (1-221)||(18308176-18308397)
chr1 (2-296)||(897484-897779)
chr1 (1-170)||(28636931-28637101)
chr1 (1-191)||(39368519-39368712)
chr1 (1-93)||(12189980-12190072)
chr1 (2-110)||(1843981-1844089)
chr1 (1-76)||(16222806-16222881)
chr1 (1-58)||(5911679-5911736)
chr1 (167-229)||(28637571-28637633)
chr1 (4-54)||(3399653-3399703)
chr1 (1-54)||(15204622-15204675)
chr1 (1-67)||(17112953-17113019)
chr1 (178-229)||(17113133-17113184)
chr1 (1-47)||(15214355-15214401)
chr1 (176-229)||(47694737-47694789)
[»] scaffold0105 (1 HSPs)
scaffold0105 (253-346)||(347-438)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-93)||(446263-446346)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 13846020 - 13846373
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846020 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtactatctg 13846119  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846120 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 13846219  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846220 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttactaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 13846319  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846320 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 13846373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 2550194 - 2550547
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  2550194 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtgttttagttacattttatagtactatttg 2550293  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2550294 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 2550393  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2550394 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttactaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 2550493  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2550494 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 2550547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 1654604 - 1654957
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  1654604 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtgttttagttacattttatagtactatctg 1654703  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654704 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacattttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 1654803  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654804 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 1654903  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654904 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 1654957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 7407826 - 7407473
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7407826 caagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtactatcag 7407727  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7407726 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttaaggagttgt 7407627  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||| ||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7407626 aaaaagtgtcgcaaaattgtataaactaattttttttaatttacaaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 7407527  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7407526 agttttaataactagtttgaattacatactctataaaagttcccatcttctctg 7407473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2943286 - 2942949
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2943286 caagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgttttagttacattttatagtattatctg 2943187  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaat---aaaaaagtgttacatttataatttttgaggagt 197  Q
    ||||||| ||||| |||||| |||| |||  |||||||||||||||||||||||| ||||||||   ||||||||||||||||||  ||||||||  |||    
T  2943186 taacaattaaaaagtgtcgc-aatgttacactattgtaacactttttgtatcactggtaacaataaaaaaaaagtgttacatttactatttttgataagt 2943088  T
Q  198 tgtaaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattaga 296  Q
    |||||||||||||||||||||||||| ||| ||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2943087 tgtaaaaagtgtcgcaaaattgtctagactaaatttttttgaatctaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattaaa 2942988  T
Q  297 tacaagttttaataactagtttgaattacatactctataa 336  Q
    |||||||||| ||||  |||||||||||||||||||||||    
T  2942987 tacaagtttt-ataataagtttgaattacatactctataa 2942949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 1628019 - 1627688
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||  ||||| ||||||||| |||| |||||||||||||||||||||| ||| ||    
T  1628019 caagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagagttttagttacattttatagtattatatg 1627920  T
Q  101 taacaatcaaaaaatgtcgcaaatggtacctta-ttgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttg 199  Q
    ||||||| ||||| ||||||||||| ||| ||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||    
T  1627919 taacaattaaaaagtgtcgcaaatgttacattatttgtaatactttttatatcactagtaacaataaaaaagtgttacatttataattttttagaagttg 1627820  T
Q  200 taaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagata 298  Q
    ||||||||||||||||||| |||||||| ||        ||| || ||| ||| ||||| ||||||||||||||||||||||||||| |||||||| |||    
T  1627819 taaaaagtgtcgcaaaattatctaaactaaatttttttaaatctaacaagtttatctttacttagacttcattcatatttgaattaatcaatattaaata 1627720  T
Q  299 caagttttaataactagtttgaattacatactc 331  Q
    ||| |||||||||| || |||||||||||||||    
T  1627719 caaattttaataacaag-ttgaattacatactc 1627688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 9633510 - 9633219
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    ||||||||||||||||||||||||  ||| || |||||||||||| |||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||    
T  9633510 aaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagagttttagttacattttagagcattatatgtaac 9633411  T
Q  105 aatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaa 204  Q
    | |||||||||||||||||  ||  | ||| ||||| ||||||  |||||  |||||| ||||||| |||| ||||||| ||||||||| |||||  |||    
T  9633410 attcaaaaaatgtcgcaaaatgttgcctatagtaacgcttttttaatcaccagtaacattaaaaaaatgttgcatttatcatttttgagaagttg-gaaa 9633312  T
Q  205 agtgtcgcaaaattgtcta-aactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattaga 296  Q
    ||||||||||||||||||| ||  ||        ||| ||||||||   |||||  |||||||||||||||||||||||| ||||||||||||    
T  9633311 agtgtcgcaaaattgtctagaataaaaaattgtgaatctaccaaataattctttctttagacttcattcatatttgaattcaccaatattaga 9633219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 28745043 - 28745226
Alignment:
Q  41 aattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaacaatcaaaaaatgtcgc-aaatggtaccttattgtaa 139  Q
    ||||||||| |||||| | ||||||||||| ||||||||||||||||| |||| ||| ||||||| ||||||| |||||| ||||  ||| |||||||||    
T  28745043 aattgttaggtaaagcacatgttactaaagagttttagttacattttagagtattatttgtaacattcaaaaagtgtcgcaaaattttacattattgtaa 28745142  T
Q  140 cactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaa 224  Q
    ||||||||||||||   |||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||||||||||||||    
T  28745143 cactttttgtatcatcagtaacaataaaaaa-tgttacatttatcatttttgagaatttgtaaaaagtgttgcaaaattgtctaa 28745226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 2179959 - 2180251
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||||||||| | ||||||||||| | || |||||||||| || | ||||  || ||||||||||| | |||||||| ||||||||||  ||||| ||||    
T  2179959 aaaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaagagctttagttatattttatagtgttatctttaac 2180058  T
Q  105 aatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaa 203  Q
    | ||||||    | | ||| || ||| |||||||||||||||||||||||      |||||||||||   |||||||||||||||||  | |||||||||    
T  2180059 attcaaaattactagtaaaatgttacgttattgtaacactttttgtatcatcaaacacaataaaaaaaa-ttacatttataattttttggaagttgtaaa 2180157  T
Q  204 aagtgtcgcaaaattgtctaaactaannnnnnnn-aatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattaga 296  Q
    |||||||  ||||||| ||| | |||         |||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||    
T  2180158 aagtgtcagaaaattgcctagattaaaaaattgtgaatttaccaaatttatgtttgcttagagttcgttcatatttgaattaaccaatattaga 2180251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36035317 - 36035421
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||  |||||||||||||||| |||| ||| ||||||||||| |||||| ||||||||||||| | |||||||||||||||||||| ||| ||    
T  36035317 caagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagctttagttacattttatagtattatatg 36035416  T
Q  101 taaca 105  Q
    |||||    
T  36035417 taaca 36035421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 27259467 - 27259356
Alignment:
Q  60 tgttactaaagtgttttagttacattttatagtactatctgtaacaatcaaaaaatgtcg-caaatggtaccttattgtaacactttttgtatcacttgt 158  Q
    ||||||||||| | ||||||||||||||| |||| ||||||||||| ||||||| |||||  ||||| ||| |||||||||||||||||||||||| |||    
T  27259467 tgttactaaagagctttagttacattttagagtattatctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcacctgt 27259368  T
Q  159 aacaataaaaaa 170  Q
    || |||||||||    
T  27259367 aaaaataaaaaa 27259356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16457403 - 16457314
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttata 90  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||| |||||| ||||||||||||  | || ||| ||||||||||    
T  16457403 caagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagctcgtgttactaaaaagcttcagtaacattttata 16457314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26707887 - 26707979
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagta 93  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |  ||||||||||| | || ||| |||||| ||||||    
T  26707887 caagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagaggttcagtaacatttcatagta 26707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 35083004 - 35083187
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||| ||||||||| || | |||||||||||||||||||| ||| |||||  || | | |||||||||| ||||||||| |||||     
T  35083004 caagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaacccttgttagaaatgagctttagttacaatttatagtattatctc 35083103  T
Q  101 taacaatcaaaaaatgtcgc------aaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttaca 178  Q
    | ||| | ||||| |||| |      ||||| ||  |||||||||||||||||| |||||| |||||||| || || |||||||    
T  35083104 tgacatttaaaaagtgtcacaaaacaaaatgttatattattgtaacactttttgcatcactagtaacaatgaagaaatgttaca 35083187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 36035535 - 36035712
Alignment:
Q  44 tgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaacaatcaaaaaatgtc-gcaaatggtaccttattgtaacac 142  Q
    |||||| |||||||| ||||| | ||| ||||||| |||||||||||||| ||| ||||||| | ||||| ||||   ||||| ||| |||||||||||     
T  36035535 tgttaggtaaagcccatgttatttaagagttttagctacattttatagtattatatgtaacatttaaaaattgtcataaaatgttacattattgtaacat 36035634  T
Q  143 tttttgtatcacttgtaacaataaaaaagtgttaca-tttataa-tttttgaggagttgtaaaaagtgtcgcaaaatt 218  Q
     ||||| |||||  |||||| ||||||| ||||||| ||| ||| ||||| || |||| ||||||||||| |||||||    
T  36035635 cttttggatcaccggtaacactaaaaaaatgttacattttgtaatttttttagaagttataaaaagtgtcacaaaatt 36035712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1613285 - 1613217
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    |||||||||||||||||| ||||||||| |||| |||| ||||| |||| |||||||| ||||||||||    
T  1613285 caagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaa 1613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5498506 - 5498594
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttat 89  Q
    |||||||||||||||||||||||||||| |||   |||||||||||||| |||| ||  ||||||||||| ||||| || | |||||||    
T  5498506 caagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctatgttactaaagagttttggtaatattttat 5498594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 16457269 - 16457159
Alignment:
Q  179 tttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatattt 278  Q
    |||||| |||||||  ||||||||||||||||||||  | ||||| | |||        ||| | ||||||||||||||||||  |||||||||||||||    
T  16457269 tttatattttttgaaaagttgtaaaaagtgtcgcaaggtcgtctagattaaaaattgagaatctgccaaatttgtctttgctttcacttcattcatattt 16457170  T
Q  279 gaattaaccaa 289  Q
     ||||||||||    
T  16457169 aaattaaccaa 16457159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 25338906 - 25338850
Alignment:
Q  167 aaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtcta 223  Q
    |||| |||| ||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  25338906 aaaaatgttgcatttatcatttttgagaagttgtaaaaagtgtctcaaaattatcta 25338850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27259517 - 27259474
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaatt 44  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||    
T  27259517 caagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 27713507 - 27713419
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagta 93  Q
    ||||| |||||||||||||||||| |||| || || |||||||||  ||| ||  ||||||||||  |||||||  | |||||||||||    
T  27713507 aaaaaagttactaattaaatttagtaacatttaaataattgttaggcaaaacctatgttactaaatagttttagcaatattttatagta 27713419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 45356184 - 45355831
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45356184 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtactatctg 45356085  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45356084 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 45355985  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||| ||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355984 aaaaagtgtcgcaaaattgtataaactaattttttttaatttactaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 45355885  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355884 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 45355831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 25638835 - 25639188
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |    
T  25638835 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtgttttagttacattttatagtactatccg 25638934  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25638935 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 25639034  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25639035 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagacaca 25639134  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25639135 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 25639188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 28249147 - 28248802
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |    
T  28249147 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtact----g 28249052  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28249051 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 28248952  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28248951 aaaaagtgtcgcaaaattgtctaaactaa-tttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 28248853  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttct 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28248852 agttttaataactagtttgaattacatactctataaaagttcccctcttct 28248802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 19369982 - 19369649
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  19369982 caagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacattttatagtattatctg 19369883  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19369882 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgt 19369783  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| ||| ||        ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19369782 aaaaagtgtcgcaaaattgtctagactaaatttttttgaatctaccaaatttgtctttgcttaaacttcattcatatttgaattaactaatattagatac 19369683  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  19369682 aagttttaataacaagtttgaattacatactcta 19369649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 19448476 - 19448809
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||    
T  19448476 caagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttatattttatagtattatctg 19448575  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19448576 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgt 19448675  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| ||| ||        ||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  19448676 aaaaagtgtcgcaaaattgtctagactaaatttttttgaatctaccaaatttgtcttcacttaaacttcattcatatttgaattaaccaatattagatac 19448775  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  19448776 aagttttaataacaagtttgaattacatactcta 19448809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 19532600 - 19532267
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||    
T  19532600 caagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttatattttatagtattatctg 19532501  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19532500 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgt 19532401  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| ||| ||        ||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  19532400 aaaaagtgtcgcaaaattgtctagactaaatttttttgaatctaccaaatttgtcttcacttaaacttcattcatatttgaattaaccaatattagatac 19532301  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  19532300 aagttttaataacaagtttgaattacatactcta 19532267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 25637673 - 25637999
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||| |||    
T  25637673 aagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaagaattttagttacattttatagtattat-tgt 25637771  T
Q  102 aacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgta 201  Q
    |||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||||    
T  25637772 aacaattaaaaagtgttgcaaatgctacattattgtaacactttttgtatcactagtaacaatactaaagtgttacatttataatttttgagaagttgta 25637871  T
Q  202 aaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||| ||| ||        ||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  25637872 aaaagtgtcgcaaaattgtctagactaaaattttttgaatctacaaaatttgtctttacatagacttcattcatatttgaattaaccaatattagataca 25637971  T
Q  301 agttttaataactagtttgaattacata 328  Q
    |||||||||||| |||||||||||||||    
T  25637972 agttttaataacaagtttgaattacata 25637999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 5528771 - 5529076
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||| ||||||||||||||||| |||| ||||||    
T  5528771 caagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagagttttagttacattttacagtattatctg 5528870  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||| | ||||| ||||||||||   || ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||    
T  5528871 taacagttaaaaagtgtcgcaaatataacattattgtaacactttttgtatcattagtaacaataaaaaagtgttacaattataatttttgagaagttgt 5528970  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| ||| ||        ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5528971 aaaaagtgtcgcaaaattgtctagactaaatttttttgaatctatcaaatttgtctttgattagacttcattcatatttgaattaaccaatattagatac 5529070  T
Q  300 aagttt 305  Q
    ||||||    
T  5529071 aagttt 5529076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 18766945 - 18767273
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||| ||| ||||||||||| ||||||||  |||||||||||| |||||  ||||||||||||| |||||||||||||||||||||| ||| |     
T  18766945 caagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttactaaagagttttagttacattttatagtattatata 18767044  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgttacatttataatttttgaggagttg 199  Q
     |||||| ||||| ||||  ||||| ||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  18767045 gaacaattaaaaagtgtcataaatgttacattattgtaacattttttgtatcactagtaacaataaaaaaagtgttacatttataatttttgagaagttg 18767144  T
Q  200 taaaaagtgtcgcaaaattgtctaaactaa-nnnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagata 298  Q
    |||||||| | ||||||||||||| || ||         ||| ||||||||||||||| ||||| |||||||||||||||||||||||  |||||| |||    
T  18767145 taaaaagtattgcaaaattgtctagacaaattttttttcaatctaccaaatttgtcttcgcttaaacttcattcatatttgaattaacttatattaaata 18767244  T
Q  299 caagttttaataactagtttgaattacat 327  Q
    |||||||||||||| ||||||||||||||    
T  18767245 caagttttaataacaagtttgaattacat 18767273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17634543 - 17634315
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  17634543 caagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaagaaatttagttacattttatagtactatctg 17634444  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||  ||| ||||||||||||||| ||||||||   |||||||||| || |||| ||||||| ||||||||| ||||||    
T  17634443 taacaatcaaaaagtgtcgcaaatattacattattgtaacactttatgtatcaccaataacaataaataaatgttgcatttatcatttttgagaagttgt 17634344  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaa 229  Q
    ||||||||| |||||||| |||| |||||    
T  17634343 aaaaagtgttgcaaaattatctagactaa 17634315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 29345459 - 29345756
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgt-tttagttacattttatagtactatct 99  Q
    |||||||||| ||||||||||||||||| |||  ||||||||||||||| |||||||| | ||||||||     |||||||||||||||||||| ||| |    
T  29345459 caagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaacaaactttagttacattttatagtattattt 29345558  T
Q  100 gtaacaatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagtt 198  Q
    |||||||||| ||  ||| ||||| || ||| |||||||||||||| |||||||||  ||||  |||||||| |||  ||| | ||||||||||| ||||    
T  29345559 gtaacaatcagaatgtgttgcaaaatgttacattattgtaacacttcttgtatcaccggtaatgataaaaaaatgt--catatctaatttttgagaagtt 29345656  T
Q  199 gtaaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagat 297  Q
    ||||||||||||||||||||||||||||| ||        ||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  29345657 gtaaaaagtgtcgcaaaattgtctaaactaaaaaattgtgaatctactaaatttgtctctgcttagacttcaatcatatttgaattaaccaatattagat 29345756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14997649 - 14997870
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||  ||||| |||| |||| ||| | ||||||||| |||| ||| ||||||||||| | ||||||||| |||||||||| || |||    
T  14997649 caagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagagctttagttaccttttatagtattaactg 14997748  T
Q  101 taacaatcaaaaaatgtcgcaaatggt-accttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttg 199  Q
    ||||| |||||||||||||||||   | || ||||||||||||||||||||||||  |||||| ||||||| |||||||||||||||||||||  |||||    
T  14997749 taacattcaaaaaatgtcgcaaaacattacattattgtaacactttttgtatcaccggtaacactaaaaaaatgttacatttataatttttgataagttg 14997848  T
Q  200 taaaaagtgtcgcaaaattgtc 221  Q
    |||||||| | |||||||||||    
T  14997849 taaaaagttttgcaaaattgtc 14997870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 6801898 - 6801674
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||| || |||||||    
T  6801898 aaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagagttttagttacattttagagtattagctgtaac 6801799  T
Q  105 aatcaaaa-----aatgtcgc-aaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagtt 198  Q
    | | ||||     | |||||| ||||| ||| |||||||||||||||||||||||   ||||| ||||| || |||||||||||| ||||||| | | |     
T  6801798 attaaaaaagtgtactgtcgcaaaatgttacattattgtaacactttttgtatcatcagtaaccataaagaaatgttacatttatcatttttgcgaatta 6801699  T
Q  199 gtaaaaagtgtcgcaaaattgtcta 223  Q
    ||||||||||| |||||||||||||    
T  6801698 gtaaaaagtgttgcaaaattgtcta 6801674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5651017 - 5650725
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||| |||||| |||  | ||||||| |||||||| ||| |||||     
T  5651017 caagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaacccttgttacaaaaaagctttagttgcattttatggtattatcta 5650918  T
Q  101 taacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatcacttgtaacaat--aaaaaagtgttacatttataatttttgaggagt 197  Q
    ||||| ||||| | |||| | ||||| ||| ||||||||||||||||||||||||  |||| |||  ||||||   ||||||| || ||||||||| |||    
T  5650917 taacattcaaatagtgtcacaaaatgttacattattgtaacactttttgtatcac-ggtaataataaaaaaaaaaattacattcatcatttttgagaagt 5650819  T
Q  198 tgtaaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatat 292  Q
    ||||| |||||||||||||| || |  |||||        ||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||    
T  5650818 tgtaataagtgtcgcaaaatcgtttggactaa-aattgttaatttacccgatttgtcattgcttagatttcattcatatttgaattaaccaatat 5650725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 6223434 - 6223652
Alignment:
Q  6 aaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaaca 105  Q
    |||| |||||| ||||||||||| |||| ||| | ||||||||| |||||| ||||||||||||| |||||||||||| |||||| || ||| |||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttacactttataatattatatgtaaca 6223533  T
Q  106 atcaaaaaa-tgtcgc-aaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt-aa 202  Q
     |||||||| |||||| ||||| ||| |||||||||||||||||| |||||  |||||| ||||||| |||||||||| ||| ||||||| |||| | ||    
T  6223534 ttcaaaaaagtgtcgcaaaatgttacattattgtaacactttttgaatcaccagtaacactaaaaaaatgttacattt-taaattttgagaagttataaa 6223632  T
Q  203 aaagtgtcgcaaaattgtct 222  Q
    ||||||||||||||||||||    
T  6223633 aaagtgtcgcaaaattgtct 6223652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 12105496 - 12105680
Alignment:
Q  109 aaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtg 208  Q
    ||||| ||||||||||||||| |||||  |||||||||||||||||  ||||||| |||||| ||||||||| || |||||| || ||||||||||||||    
T  12105496 aaaaagtgtcgcaaatggtacgttattaaaacactttttgtatcaccggtaacaagaaaaaaatgttacattcatcattttttagaagttgtaaaaagtg 12105595  T
Q  209 tcgcaaaattgtctaaa-ctaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatat 292  Q
    ||||||||||||||||| | ||        ||| |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  12105596 tcgcaaaattgtctaaaccaaaaaattgtgaatctaccaaatttgtttttgcttagatttcattcatatttgaattaaccaatat 12105680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 27810171 - 27810253
Alignment:
Q  246 aaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatacaagttttaataactagtttgaattacata 328  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  27810171 aaatttgtctttgtttagacttcattcatatttgaattaaccaattttagatacaagttttaataacaagtttgaattacata 27810253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 6403622 - 6403847
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||| ||||  | || ||| |||||||||| |  ||  |||    
T  6403622 aagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagcccgtgttattaaaaagcttcagtaacattttata-tcataattgt 6403720  T
Q  102 aacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt- 200  Q
    |||| | ||||||||| ||| ||  ||  || |||||||| ||||||||| ||  |||||| ||||||| ||| ||||||||| |||||||  ||||||     
T  6403721 aacagtaaaaaaatgttgcatat-ttatatt-ttgtaacattttttgtatgaccagtaacactaaaaaaatgtcacatttatattttttgaaaagttgta 6403818  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaa 229  Q
    ||||||||||||||| | ||||| |||||    
T  6403819 aaaaagtgtcgcaaagtcgtctagactaa 6403847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29553657 - 29553725
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||    
T  29553657 caagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaaagcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31347377 - 31347493
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||| |||||||||||||||| |||| |||| ||||||||||||||| || ||||||||||     || ||| ||||||||||  | ||| ||    
T  31347377 caagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatcctgtgttactaaccatcttcagtaacattttatatcattatttg 31347476  T
Q  101 taacaatcaaaaaatgt 117  Q
    ||||||| |||||||||    
T  31347477 taacaataaaaaaatgt 31347493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 5000711 - 5000935
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||| ||||||||||||||||||| |||| |||| |||| ||||| | || || |||||||||||| | |  ||| | |  |||||||| |||| |||||    
T  5000711 aaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaaacctgtgttactaaagagctagagtaagacgttatagtattatcagtaac 5000810  T
Q  105 aatcaaaaaatgtcgcaaatg-gtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttaca--tttataatttttgaggagttgta 201  Q
    | || ||||||||  |  ||  |||| ||   |||||||||||||||||||  ||||||  |||||| ||| |||  ||||||||||| |||  ||||||    
T  5000811 actcgaaaaatgttacttatttgtactttg--gtaacactttttgtatcacgggtaacatgaaaaaaatgtcacacatttataatttt-gagatgttgta 5000907  T
Q  202 aaaagtgtcgcaaaattgtctaaactaa 229  Q
    ||||| |||||||| ||||||| |||||    
T  5000908 aaaagagtcgcaaagttgtctagactaa 5000935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 31369172 - 31369088
Alignment:
Q  7 aaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatag 91  Q
    |||||||||||||||| |||||  ||| || ||||| |||||  ||||||   ||||||||||| |||| |||||||||||||||    
T  31369172 aaatgttactaattaagtttagtgacatttaaacaaatgttatgtaaagcttatgttactaaagagtttcagttacattttatag 31369088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 29118572 - 29118484
Alignment:
Q  67 aaagtgttttagttacattttatagtactatctgtaacaatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcac 154  Q
    |||| |||| ||| ||| |||| |||| ||||||||||| ||||||  ||| ||||| || ||| | ||||||||||||||||||||||    
T  29118572 aaagagtttaagtcacactttacagtattatctgtaacattcaaaacgtgttgcaaaatgttacatcattgtaacactttttgtatcac 29118484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 43600295 - 43600648
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600295 caagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtactatctg 43600394  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600395 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 43600494  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600495 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttactaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 43600594  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600595 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 43600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 1685024 - 1684691
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||    
T  1685024 caagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacaatttatagtattatctg 1684925  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  1684924 taacaattaaaaagtgtcgcaaatgttacaatattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgt 1684825  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| ||| ||        ||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||    
T  1684824 aaaaagtgtcgcaaaattgtctagactaaatttttttgaatctaccaaatttgtcttcgcttaaacttcattcagatttgaattaaccaatatcagatac 1684725  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  1684724 aagttttaataacaagtttgaattacatactcta 1684691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 47066106 - 47065762
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |    
T  47066106 caagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttttagttacattttatagtactatccg 47066007  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||| |||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||||||    
T  47066006 taacaatcaaaaagtgtcgcaaatgttacactattgtaacactttttgtataactagtaacaataaaaaagtgttacatttataaattttaagaagttgt 47065907  T
Q  201 aaaaagtgtcgcaaaattgtctaaacta-annnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||| |||||||||| || |||| |        ||| ||| ||| || ||||||||||||||||||||||||||||||||||  |||||||| ||    
T  47065906 aaaaagtgtggcaaaattgtttagactataatttttttaatctacaaaaattttctttgcttagacttcattcatatttgaattaac--atattagagac 47065809  T
Q  300 aagttttaataactagtttgaattacatactctataaaagttcccct 346  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||||    
T  47065808 aagttttaataaccaatttgaattacatactctataaaatttcccct 47065762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 53300379 - 53300725
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||||||| |    
T  53300379 caagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagagttttagttacattttatcgtactatccg 53300478  T
Q  101 taacaatcaaaaaatgtcgcaaatggt---accttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagt 197  Q
    ||||||||||||| ||||||||||| |   ||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| || |||    
T  53300479 taacaatcaaaaagtgtcgcaaatgttacaacactattgtaacactttttgtataactagtaacaataaaaaagtgttacatttataaattttaagaagt 53300578  T
Q  198 tgtaaaaagtgtcgcaaaattgtctaaacta-annnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattaga 296  Q
    |||||||||||| |||||||||| || |||| |        ||| || ||||||| |||||||||| |||||||||||||||||||||||  ||||||||    
T  53300579 tgtaaaaagtgtggcaaaattgtttagactataatttttttaatcta-caaatttttctttgcttatacttcattcatatttgaattaac--atattaga 53300675  T
Q  297 tacaagttttaataactagtttgaattacatactctataaaagttcccct 346  Q
     |||||||||| |||| | ||||||||||||||||||||||| |||||||    
T  53300676 gacaagttttattaacaaatttgaattacatactctataaaatttcccct 53300725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 1152073 - 1152300
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||||| |||||||||||||| |||||||||||| |||||| || |||||||    
T  1152073 aagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaagagttttagttacagtttataatattatctgt 1152172  T
Q  102 aacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgta 201  Q
    |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  1152173 aacaattaaaaagtgtctcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgta 1152272  T
Q  202 aaaagtgtcgcaaaattgtctaaactaa 229  Q
    |||||||||||||||||||||| |||||    
T  1152273 aaaagtgtcgcaaaattgtctagactaa 1152300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 293
Target Start/End: Complemental strand, 27739807 - 27739554
Alignment:
Q  41 aattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaacaatcaaaaaatgtcgcaaa--tggtaccttattgta 138  Q
    ||||||||| |||||||| ||||||| ||| | |||||||||||||||||||| ||||||||| ||||||||| ||||| |||  |  ||| ||||||||    
T  27739807 aattgttaggtaaagcccatgttactgaagagctttagttacattttatagtattatctgtaagaatcaaaaagtgtcgaaaaacttttacattattgta 27739708  T
Q  139 acactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaannnnnnnna 238  Q
    ||| ||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||        |    
T  27739707 acattttttgtatcaatactaacaataaaaaaatgttacatttataatttttgaggagttgtaaaaagtgtcacaaaattatctagactaa-aattgtga 27739609  T
Q  239 atttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatatt 293  Q
    || |||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  27739608 atctaccgaatttgtctttgcttagacttcagtcataattgaattaaccaatatt 27739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 37751058 - 37750838
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    ||||||||||||||||||| | || |||| |||  ||||||||||||||||||  |||||||||   | |||||||||||||||||||| ||||| | ||    
T  37751058 aaaaatgttactaattaaaatcagtaacatttgcgcaattgttagataaagccaatgttactaagaagctttagttacattttatagtattatctat-ac 37750960  T
Q  105 aatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaa 204  Q
    | ||||||||||||||||||| ||| ||||||||||||||||||||||||  |   || | ||||| | |||||||||||||||||||| ||||||||||    
T  37750959 attcaaaaaatgtcgcaaatgttacattattgtaacactttttgtatcaccgg---cactcaaaaaatattacatttataatttttgagaagttgtaaaa 37750863  T
Q  205 agtgtcgcaaaattgtctaaactaa 229  Q
    ||| |||||||||||| || |||||    
T  37750862 agtatcgcaaaattgtatagactaa 37750838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 21539343 - 21539175
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||| ||||||||||| ||||||||||| |||| || |||||||||||||||| | || ||||||||||| | |||||||||||||| ||||| |||| |    
T  21539343 caaggaaaatgttactgattaaatttagtaacatttaaacaattgttagataa-gtccttgttactaaagagatttagttacattttttagtattatc-g 21539246  T
Q  101 taacaatcaaaaaatgtcgcaaatggtacc-ttattgtaacactttttgtatcacttgtaacaataaaaaa 170  Q
    ||||||| | ||||| |||||||  |||   |||||||||||| ||||| |||||   |||||||||||||    
T  21539245 taacaataagaaaatatcgcaaaatgtaatattattgtaacaccttttgcatcaccaataacaataaaaaa 21539175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 4904209 - 4904125
Alignment:
Q  4 gaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttta 88  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||||| |||||| | ||||||||||||| |||||||||||||||    
T  4904209 gaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaagtgctttagttacatttta 4904125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24559067 - 24558963
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||| ||| | | ||||||||||||  ||||||| | ||||||||||| |||| |    
T  24559067 caagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaacggctgtgttactaaagaattttagtgatattttatagtattatcag 24558968  T
Q  101 taaca 105  Q
    |||||    
T  24558967 taaca 24558963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4881141 - 4881054
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttta 88  Q
    |||||||||||||||| ||||||||||| || | ||| | ||||||||| ||||| |||||||||||||||| ||||||| |||||||    
T  4881141 caagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaagtgctttagttgcatttta 4881054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 48464072 - 48464116
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttag 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  48464072 aaaaatgttactaattaaatttagtaacatttgaacaattgttag 48464116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 4685475 - 4685126
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4685475 caagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaagtgttttagttacattttatagtactatctg 4685376  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685375 taacaatcaaaaagtgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 4685276  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685275 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 4685176  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttc 350  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4685175 agttttaataactagtttgaattacatactctataaaagttcccatcttc 4685126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 9242556 - 9242223
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||     
T  9242556 caagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagagttttagttacattttatagtattatcta 9242457  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||    
T  9242456 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactattaacaatgaaaaagtgttacatttataatttttgagaagttgt 9242357  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| | | ||        ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9242356 aaaaagtgtcgcaaaattgtctagattaaatttttttgaatctaccaaatttgtcttcgcttaaacttcattcatatttgaattaaccaatattagatac 9242257  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  9242256 aagttttaataacaagtttgaattacatactcta 9242223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 5 - 345
Target Start/End: Original strand, 10022156 - 10022486
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||| |||||| |||||||||||||  |||||||||||||||||| |||||||||||||    
T  10022156 aaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaagaattttagttacattttatattactatctgtaac 10022255  T
Q  105 aatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaa 204  Q
    ||| ||||| ||||||||            ||| ||| || |||||||||  ||||||||||||||| || |||||||||||||||||| || ||| |||    
T  10022256 aattaaaaagtgtcgcaa------------tgttaca-ttattgtatcaccggtaacaataaaaaagagtaacatttataatttttgagaag-tgtcaaa 10022341  T
Q  205 agtgtcgcaaaattgtctaaacta----annnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||| || ||||             ||||||| ||||||||||||||||||||||||||||||||  |||||| |||||||| |||||    
T  10022342 agtgtcgcaaaattgtttagactatttttttttttataatttacaaaatttgtctttgcttagacttcattcatattataattaatcaatattacataca 10022441  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccc 345  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||    
T  10022442 agttttaataaccagtttgaattacatactccataaaatttcccc 10022486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 20277428 - 20277131
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||||| ||| ||||||||||||| |||| || |||||||||||| |||||| | ||||||||||| | |||||||||||| ||||||| ||||||||||    
T  20277428 aaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagagctttagttacattatatagtattatctgtaac 20277329  T
Q  105 aatcaaaaaa-tgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaa 202  Q
    ||| |||||| ||| ||||| || ||  |||||| |||||||||||||||||   |||| |||||||| |||||||||||||||||||||| ||||||||    
T  20277328 aataaaaaaaatgtagcaaaatgttatattattgaaacactttttgtatcaccaataacgataaaaaaatgttacatttataatttttgagaagttgtaa 20277229  T
Q  203 aaagtgtcgcaaaattgtctaaact--aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagata 298  Q
    ||||||||| |||||||||||||||  ||        |||  || ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20277228 aaagtgtcgtaaaattgtctaaactaaaaaaaatatgaatcaactaaatttgtctttgtttagacttcagtcatatttgaattaaccaatattagata 20277131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 26608611 - 26608423
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||     
T  26608611 caagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagagctttagttgcattttatagtactatcta 26608512  T
Q  101 taacaatcaaaaaatgtcgc-aaatggtaccttattgtaacac-tttttgtatcacttgtaacaataaaaaagtgttacatttataatt 187  Q
    ||||||||||||| |||||| ||||| ||| ||||||||| || ||||| ||||||  |||||| ||||||| || || ||||||||||    
T  26608511 taacaatcaaaaagtgtcgcaaaatgttacattattgtaagacttttttttatcaccggtaacactaaaaaaatgctatatttataatt 26608423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 19746791 - 19746933
Alignment:
Q  142 ctttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatt 241  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||        ||||    
T  19746791 ctttttgtatctcttgtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctaaacaaatttttttgaatt 19746890  T
Q  242 taccaaatttgtctttgcttagacttcattcatatttgaatta 284  Q
    || ||||||||||||||| ||||||| ||||||||||||||||    
T  19746891 tatcaaatttgtctttgcgtagactttattcatatttgaatta 19746933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 26621162 - 26620973
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    ||||||||||||||| |||||||||||||||| || |||||||||||||||||  || ||||||||||| | |||||||||||||||||||| |||||||    
T  26621162 aagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagagctttagttacattttatagtattatctgt 26621063  T
Q  102 aacaatcaaaaaatgtc-gcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataattttt 190  Q
    |||| ||||||| ||||   ||||| ||| |||||| ||||||| |||||||||   ||||| ||||||| ||||||||| |||||||||    
T  26621062 aacattcaaaaagtgtcataaaatgttacattattgcaacacttgttgtatcaccgataacactaaaaaaatgttacattcataattttt 26620973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26619175 - 26618955
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||| ||||||||||  |||| |||||||||||| || |||| ||  |||||||||||   ||||||||||||| |||||| ||| ||    
T  26619175 caagaaaaatgttactgattaaatttattaacatttgaacaattgt-aggtaaatcctatgttactaaagaactttagttacatttgatagtattatttg 26619077  T
Q  101 taacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaa-agtgttacatttataatttttgaggagtt 198  Q
    ||||| ||||||| |||||| ||||| ||| ||||||||||||||||||||||||   ||||| |||||| | |||||||||||||||||||| | |       
T  26619076 taacattcaaaaagtgtcgcaaaatgctacattattgtaacactttttgtatcaccgataacactaaaaataatgttacatttataatttttgggaa--- 26618980  T
Q  199 gtaaaaagtgtcgcaaaattgtcta 223  Q
    ||||||| |||||||||||||||||    
T  26618979 gtaaaaaatgtcgcaaaattgtcta 26618955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26225050 - 26224938
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| ||||||||| ||||||||| ||||| |||    
T  26225050 caagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagttttagtttcattttataatactacctg 26224951  T
Q  101 taacaatcaaaaa 113  Q
    |||||||||||||    
T  26224950 taacaatcaaaaa 26224938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26205487 - 26205375
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||  |||||||||||| ||||||||| ||||| |||||||||  ||    
T  26205487 caagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttactaaagagttttagtttcatttgatagtactacttg 26205388  T
Q  101 taacaatcaaaaa 113  Q
    |||||||||||||    
T  26205387 taacaatcaaaaa 26205375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 3374556 - 3374646
Alignment:
Q  131 ttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaa-aagtgtcgcaaaattgt 220  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||    
T  3374556 ttattgtaacactttttgtatcaccagtaacaataaaaaagtgttacatttataattttttagaagttgtaaagaagtgttgcaaaattgt 3374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30089763 - 30089880
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||||||  ||||||| ||||||||||| | |||||||||||||||||||| ||| |     
T  30089763 caagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagagctttagttacattttatagtattatttt 30089862  T
Q  101 taacaatcaaaaaatgtc 118  Q
    ||||| ||||||| ||||    
T  30089863 taacattcaaaaagtgtc 30089880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 8241630 - 8241851
Alignment:
Q  6 aaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaaca 105  Q
    ||||||||||| ||| ||||||  || | ||||||| ||||||||||||  || ||||| |||||   || |||||||| ||||| || |||| |||| |    
T  8241630 aaaatgttactgattgaatttaataatatttgaacagttgttagataaaatccatgttattaaagaacttcagttacatattataatattatccgtaaaa 8241729  T
Q  106 atcaaaaaatgtcgcaa-atggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaa 204  Q
    || ||||| || || || ||| ||  ||||||||||||||||||||||||| |||||||||||||| | ||| ||| |||| ||||||| | ||||||||    
T  8241730 ataaaaaagtgccgtaatatgttagattattgtaacactttttgtatcactagtaacaataaaaaaatattatattcataa-ttttgagaaattgtaaaa 8241828  T
Q  205 agtgtcgcaaaattgtctaaactaa 229  Q
    |  |||| ||||||||||| |||||    
T  8241829 a--gtcgtaaaattgtctagactaa 8241851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 16170303 - 16170379
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagtta 81  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||| ||||  |  |||||||| |||||||||||||    
T  16170303 aaaagtgttactaattaaatttagtaacacttaaacaattgttaggtaaaatcaatgttactagagtgttttagtta 16170379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 27135958 - 27136031
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttt 75  Q
    ||||||||||||| | |||| || ||  |||| ||||||||||||||||||||||| |||||||||||| ||||    
T  27135958 aagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagagttt 27136031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 3374646 - 3374700
Alignment:
Q  240 tttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatatta 294  Q
    |||| ||||||||| ||| |||| ||||||||||| |||||||||||||||||||    
T  3374646 tttatcaaatttgtatttacttaaacttcattcatgtttgaattaaccaatatta 3374700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 16086519 - 16086607
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagta 93  Q
    |||| ||||||||||||||||||  |||| ||||| ||||||||| |||||| | ||||||| ||  | || ||| |||||||||||||    
T  16086519 aaaactgttactaattaaatttaataacatttgaataattgttaggtaaagctcatgttacttaatagcttcagtaacattttatagta 16086607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 2931884 - 2931840
Alignment:
Q  245 caaatttgtctttgcttagacttcattcatatttgaattaaccaa 289  Q
    |||||||| ||||| ||||||||||||||||||| || |||||||    
T  2931884 caaatttgcctttgattagacttcattcatatttcaactaaccaa 2931840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 15361743 - 15362096
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  15361743 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttttagttacattttatagtactatctg 15361842  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15361843 taacaatcaaaaagtgttgcaaatggtaccttattgtaaaactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 15361942  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15361943 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 15362042  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15362043 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 15362096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 16734833 - 16735186
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16734833 caagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtactatctg 16734932  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16734933 taacaatcaaaaagtatcgcaaatggtaccttattgtaacactttctgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 16735032  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16735033 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 16735132  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16735133 agttttaataactagtttcaattacatactctataaaagttcccctcttctctg 16735186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11936839 - 11936615
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11936839 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 11936740  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11936739 taacaataaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 11936640  T
Q  201 aaaaagtgtcgcaaaattgtctaaa 225  Q
    ||||||||| |||||||||| ||||    
T  11936639 aaaaagtgttgcaaaattgtgtaaa 11936615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11948819 - 11948595
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11948819 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 11948720  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11948719 taacaataaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 11948620  T
Q  201 aaaaagtgtcgcaaaattgtctaaa 225  Q
    ||||||||| |||||||||| ||||    
T  11948619 aaaaagtgttgcaaaattgtgtaaa 11948595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 17719795 - 17719461
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||    
T  17719795 caagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacaatttatagtattatctg 17719696  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  17719695 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgt 17719596  T
Q  201 aaaaagtgtcgcaaaattgtctaaact--aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagata 298  Q
    |||||||||||||||||||||||||||  ||        ||| | |||||||||||||  |||| |||||||||| ||| |||||||||||||| | |||    
T  17719595 aaaaagtgtcgcaaaattgtctaaactaaaatttttttgaatctcccaaatttgtcttcacttaaacttcattcagattagaattaaccaatatcatata 17719496  T
Q  299 caagttttaataactagtttgaattacatactcta 333  Q
    |||||||||||||| |||||||||||||| |||||    
T  17719495 caagttttaataacaagtttgaattacattctcta 17719461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12591861 - 12592194
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  12591861 caagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagttttagttacaatttatagtattatctg 12591960  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||  |||||||||||||| ||||||    
T  12591961 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtcacaataaaaaagtgttactattataatttttgagaagttgt 12592060  T
Q  201 aaaaagtgtcgcaaaattgtcta-aactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||| ||||||| ||  ||         || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  12592061 aaaaagtgtcgcaaatttgtctagaataaaaaaatttggatctaccaaatttgtctttgcttagacttccttcatatttgaattaaccaatattaaatac 12592160  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  12592161 aagttttaataacaagtttgaattacatactcta 12592194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 14669418 - 14669082
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| ||    
T  14669418 caagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagttttagttacattttatagtattatttg 14669319  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||    
T  14669318 taacaattaaaaagtgtcacaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagtcgt 14669219  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgctta---gacttcattcatatttgaattaaccaatattaga 296  Q
    |||||||||||||||||| |||| ||| ||        ||| |||||||||| |||| |||||    |||||||||||||||||||||||||||||||||    
T  14669218 aaaaagtgtcgcaaaattatctagactaaatttttttgaatctaccaaatttatcttcgcttaaattacttcattcatatttgaattaaccaatattaga 14669119  T
Q  297 tacaagttttaataactagtttgaattacatactcta 333  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14669118 tacaagttttaataacaagtttgaattacatactcta 14669082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 6684122 - 6684461
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||| || ||||||||||| |||||||||||||||||||||| |||||     
T  6684122 caagaaaaatgttactaattaaatttagtaacactcgaaca-ttgttaggtaaagtccatgttactaaagagttttagttacattttatagtattatcta 6684220  T
Q  101 t-------aacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgag 193  Q
    |       |||||| ||||| ||||||||||| ||  |||||||||||||| |||||||||| |||||||||||| |||||||| ||||||| |||||||    
T  6684221 ttatctataacaattaaaaagtgtcgcaaatgttatattattgtaacacttcttgtatcactagtaacaataaaatagtgttacgtttataaattttgag 6684320  T
Q  194 gagttgtaaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatat 292  Q
     ||||||||||||||||||||||||||||||||| ||        ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  6684321 aagttgtaaaaagtgtcgcaaaattgtctaaactaaagtttcttgaatctaccaaatttttctttacttagacttcattcatatttgaattaaccaatat 6684420  T
Q  293 tagatacaagttttaataactagtttgaattacatactcta 333  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  6684421 tagatacaagttttaataacaagtttgaattacatactcta 6684461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 10070687 - 10070873
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||| ||||||||||||||||||  ||||||  || ||||||||  ||||| |||||||||||||  |||||||||||||||||||||| ||| ||||||    
T  10070687 aaaattgttactaattaaatttaataacactcaaataattgttacgtaaagtccgtgttactaaaa-gttttagttacattttatagtattatttgtaac 10070785  T
Q  105 aatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttga 192  Q
    |||  |||| ||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  10070786 aatttaaaagtgtcgcaaatgttacattattgtaacactttttgtatcattagtaacaataaaaaagtgttacatttataatttttga 10070873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 29667986 - 29667899
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttat 89  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||  |||||| ||||| | |||||| |||||||||    
T  29667986 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagcttgtgttattaaagagatttagtaacattttat 29667899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 1942597 - 1942750
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||| ||||| || |||||||  |||| |||| |||||| ||| |||| ||  ||||| ||||    |||||||||||||||||||| ||||||    
T  1942597 caagaaaaatattactgataaaatttaataacatttgagcaattgctaggtaaaacctttgttattaaatatctttagttacattttatagtattatctg 1942696  T
Q  101 taacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatca 153  Q
    ||||||| |||| ||||||| ||||| ||| |||||||||||  ||||||||||    
T  1942697 taacaattaaaatatgtcgcaaaatgttacattattgtaacatcttttgtatca 1942750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 23904423 - 23904243
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatct-g 100  Q
    |||||||| |||||||| | ||||||| |||| ||||||||||||||| |||||||| | |||| |||| | |||| ||||| ||||||||| |||||      
T  23904423 aagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaagcccctcttacaaaagaggttta-ttacactttatagtattatctct 23904325  T
Q  101 taacaatcaaaaaatgtcgcaaatggt--accttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatt 180  Q
    ||||| ||||||| |||| |||   ||  || |||||||||||||||||||||||   || ||||||| ||| |||||||||    
T  23904324 taacattcaaaaagtgtcacaagatgtaaacattattgtaacactttttgtatcaacagtgacaataacaaaatgttacatt 23904243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9631227 - 9631123
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttaca-ttttatagtactatct 99  Q
    |||||| || |||||||| ||||||||| |||| |||||||||||||||  | ||||| |||||||| || |||||||||||| ||||| |||| |||||    
T  9631227 caagaagaacgttactaagtaaatttagtaacatttgaacaattgttaggcatagcccctgttactatagagttttagttacatttttagagtattatct 9631128  T
Q  100 gtaac 104  Q
    |||||    
T  9631127 gtaac 9631123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23264568 - 23264499
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 70  Q
    |||||||| ||||||||||||||||||| |||| | ||||||||||||| ||||  ||||||||||||||    
T  23264568 caagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaag 23264499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4485637 - 4485521
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||| |||||| |||||||||||||||| || | ||||| ||||||||| ||||| |||||||| ||||  |||||||| ||| | ||||| | |||  |    
T  4485637 caaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaaagtccgtgttattaaatagttttagtaacaatctatagaattattag 4485538  T
Q  101 taacaatcaaaaaatgt 117  Q
    ||||| | |||||||||    
T  4485537 taacattaaaaaaatgt 4485521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15690466 - 15690529
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgtta 64  Q
    ||||||||||||||||||||||||||||  |||||  |||||||||||| ||||| || |||||    
T  15690466 caagaaaaatgttactaattaaatttagtgacactcaaacaattgttagctaaagtccatgtta 15690529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30481300 - 30481231
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 70  Q
    ||||||||||||| |||||||||| ||| |||| |||||||| | ||||||||||  | |||||||||||    
T  30481300 caagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataaagatcatgttactaaag 30481231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 10264033 - 10264077
Alignment:
Q  245 caaatttgtctttgcttagacttcattcatatttgaattaaccaa 289  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||    
T  10264033 caaatttgtctttgcttagacttcaataatatttcaattaaccaa 10264077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34374853 - 34374947
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaac--aattgttagataaagcccgtgttactaaagtgttttagttacattttatagta 93  Q
    ||||||||||||||||||||| |||| | |||| ||||||  |||||||||  |||  | |||||||||||| |||| ||| | |||||||||||    
T  34374853 caagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtgttactaaagagtttgagtaatattttatagta 34374947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27969989 - 27969921
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    ||||||| ||||||||| || |||||||||||| || ||||| |||||| ||||| |  ||||||||||    
T  27969989 caagaaatatgttactatttcaatttagcaacatttcaacaaatgttaggtaaagtctatgttactaaa 27969921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 6727 - 7077
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  6727 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttttagttacattttatagtactatctg 6826  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6827 taacaatcaaaaagtgttgcaaatggtaccttattgtaaaactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 6926  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 300  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6927 aaaaagtgtcgcaaaattgtctaaactaattttttttaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagataca 7026  T
Q  301 agttttaataactagtttgaattacatactctataaaagttcccctcttct 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7027 agttttaataactagtttgaattacatactctataaaagttcccctcttct 7077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 5079136 - 5078799
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079136 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtactatctg 5079037  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5079036 taacaatcaaaaagtgttgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataa-ttttgaggagttgt 5078938  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaa-nnnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  5078937 aaaaagtgtcgcaaaattgtctaaactaatttttttttaatttaccaaatttgtctttgcttaaatttcattcatatttgaattaaccaatattagatac 5078838  T
Q  300 aagttttaataactagtttgaattacatactctataaaa 338  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5078837 aagttttaataactagtttgaattacatactctataaaa 5078799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 17037571 - 17037902
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||    
T  17037571 caagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagagttttagttacattttatagtattatctg 17037670  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||     
T  17037671 taacaattaaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaat-aaaaagtgttacatttataatttttaagaagttga 17037769  T
Q  201 aaaaagtgtcgcaaaattgtctaaacta-annnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
     ||||||||||||||||||| || |||| |        ||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||    
T  17037770 caaaagtgtcgcaaaattgtatagactagattttttttaatctaccaaatttgtctttacttaaactt-attcatatttgaattaaccaatatttgatac 17037868  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||| ||||| ||||||||||||||    
T  17037869 aagttttaataacaagtttcaattacatactcta 17037902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 7410856 - 7411033
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  7410856 aaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacattttatagtacaatttgtaac 7410955  T
Q  105 aatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacattta 182  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7410956 aatcaaaaagtgttgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacattta 7411033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 109 - 333
Target Start/End: Complemental strand, 23616778 - 23616553
Alignment:
Q  109 aaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtg 208  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23616778 aaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtg 23616679  T
Q  209 tcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatacaagtttta 307  Q
    |||||||||||||||  || ||        ||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23616678 tcgcaaaattgtctaggctaaatttttttgaatctaccaaatttgtcttcacttaaacttcattcatatttgaattaaccaatattagatacaagtttta 23616579  T
Q  308 ataactagtttgaattacatactcta 333  Q
    ||||| ||||||||||||||||||||    
T  23616578 ataacaagtttgaattacatactcta 23616553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 109 - 333
Target Start/End: Complemental strand, 23848175 - 23847950
Alignment:
Q  109 aaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtg 208  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23848175 aaaaagtgtcgcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtg 23848076  T
Q  209 tcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatacaagtttta 307  Q
    |||||||||||||||  || ||        ||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23848075 tcgcaaaattgtctaggctaaatttttttgaatctaccaaatttgtcttcacttaaacttcattcatatttgaattaaccaatattagatacaagtttta 23847976  T
Q  308 ataactagtttgaattacatactcta 333  Q
    ||||| ||||||||||||||||||||    
T  23847975 ataacaagtttgaattacatactcta 23847950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 174 - 338
Target Start/End: Original strand, 7411534 - 7411700
Alignment:
Q  174 ttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaannnnnnnn--aatttaccaaatttgtctttgcttagacttcatt 271  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||           |||||| |||||||||||||||||||||||||||    
T  7411534 ttacatttataatttttgaggagttgtaaaaagtgttgtaaaattgtctaaactatttttttttttaatttatcaaatttgtctttgcttagacttcatt 7411633  T
Q  272 catatttgaattaaccaatattagatacaagttttaataactagtttgaattacatactctataaaa 338  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  7411634 catatttgaattaaccaatattaaatacaagttttaataactactttgaattacatactctataaaa 7411700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 19985023 - 19985177
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||| |||||||||||||||| |||||| |||| ||||| ||||||||| ||||| ||  |||||||||| |||||||||||||||||||||| ||| ||    
T  19985023 caaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagagttttagttacattttatagtattatatg 19985122  T
Q  101 taacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatcac 154  Q
    ||| ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||    
T  19985123 taataatcaaaaagtgttgcaaaatgttacattattgtaacactttttgtatcac 19985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31571057 - 31571283
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacactt----gaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtacta 96  Q
    |||||||||||||||| |||||| |||| ||||  |    | ||||||||||| |||| ||| ||||||||||| | ||||| | |||| ||||||| ||    
T  31571057 caagaaaaatgttactgattaaaattagtaacatatatatgtacaattgttaggtaaaacccatgttactaaagagctttagatccattatatagtatta 31571156  T
Q  97 tctgtaacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatca-cttgtaacaataaaaaagtgttacatttataatttttgagg 194  Q
    || |||||| |||||||||||||| ||||| ||| |||||||||||||||  |||| | |  |||||| |||||||   |||| |||||||||||| ||     
T  31571157 tcggtaacattcaaaaaatgtcgcaaaatgttacattattgtaacactttccgtattaccgggtaacactaaaaaaacattacttttataatttttaaga 31571256  T
Q  195 agttgtaaaaagtgtcgcaaaattgtc 221  Q
    |||||||||||||||||||||||||||    
T  31571257 agttgtaaaaagtgtcgcaaaattgtc 31571283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23679469 - 23679581
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||||||||||| |||||| | |||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||| ||| ||    
T  23679469 caagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttttagttacattttatagtattatttg 23679568  T
Q  101 taacaatcaaaaa 113  Q
    ||||||| |||||    
T  23679569 taacaattaaaaa 23679581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 23855342 - 23855230
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||||||||||| |||||| | |||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||| ||| ||    
T  23855342 caagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttttagttacattttatagtattatttg 23855243  T
Q  101 taacaatcaaaaa 113  Q
    ||||||| |||||    
T  23855242 taacaattaaaaa 23855230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 12042249 - 12042099
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcc-cgtgttactaaagtgttttagttacattttatagtactatct 99  Q
    |||||||||||||||| ||| ||||||| |||| ||||||||||||||| |||||   | | ||||||||| ||||||||||||||||||| || ||| |    
T  12042249 caagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaagaaacctattactaaagagttttagttacattttatattattattt 12042150  T
Q  100 gtaacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgt 149  Q
    |||| ||| ||||| |||||| ||||| ||| |||||||||||||||||||    
T  12042149 gtaataataaaaaagtgtcgcaaaatgatacattattgtaacactttttgt 12042099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 37233061 - 37233164
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    |||||||| |||||||||||||||||| |||| |||| |||||||||| || || |||||||||||||  |||| ||| ||||||||||||| |||| ||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttatagtattatcagt 37233160  T
Q  102 aaca 105  Q
    ||||    
T  37233161 aaca 37233164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 30786295 - 30786441
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||| ||| ||||||| |||| ||||| ||||||||| ||||  || ||||||||||  | |||||| |||||||||  || ||| ||    
T  30786295 caagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaagatttagtcacattttatgttattatttg 30786394  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacacttttt 147  Q
    ||||||| ||||| |||||||||   | | |||||||||||||||||    
T  30786395 taacaataaaaaagtgtcgcaaaatatccattattgtaacacttttt 30786441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31069034 - 31068971
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttac 65  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  31069034 caagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 38449888 - 38449831
Alignment:
Q  164 taaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtc 221  Q
    ||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  38449888 taaaaaaatgtttcatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtc 38449831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 42076078 - 42076143
Alignment:
Q  4 gaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaa 42076143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9354461 - 9354393
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||| |||||||| ||||||||||    
T  9354461 caagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaagcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9333633 - 9333565
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||| ||||| |  ||||||||||    
T  9333633 caagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagtcgatgttactaaa 9333565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 10869817 - 10869900
Alignment:
Q  134 ttgtaacactttttgtatcacttgtaaca-ataaaaaagtgt--tacatttataatttttgaggagttgtaaaaagtgtcgcaaa 215  Q
    |||||||||||||||||||||| |||||| | |||||| |||   |||||||||| ||||||| |||||||||||||||||||||    
T  10869817 ttgtaacactttttgtatcactagtaacataaaaaaaaatgtcacacatttataa-ttttgagaagttgtaaaaagtgtcgcaaa 10869900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 40402080 - 40402013
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    |||||||||||||||||||||||||||  ||  ||||||||||||||| ||||| | ||||| |||||    
T  40402080 aagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtgttgctaaa 40402013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 10869468 - 10869513
Alignment:
Q  4 gaaaaatgttactaattaaatttagcaacacttgaacaattgttag 49  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||    
T  10869468 gaaaattgttactaattaaatttagtaacatttgaacaattgttag 10869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 42076256 - 42076297
Alignment:
Q  188 tttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 229  Q
    |||||| ||||||||||||||||||||| ||||||| |||||    
T  42076256 tttgagaagttgtaaaaagtgtcgcaaagttgtctagactaa 42076297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31342788 - 31342560
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31342788 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 31342689  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31342688 taacaatcaaaaagtgttgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 31342589  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaa 229  Q
    ||||| |||||||||||||||||||||||    
T  31342588 aaaaaatgtcgcaaaattgtctaaactaa 31342560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 15513695 - 15514026
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||||| |||||| ||||||||||||  | |||||||||||||||||||||||||||    
T  15513695 caagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaagatttagttacattttatagtactatctg 15513794  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    || |||||||||| |||||| |||| ||| |||||  |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||    
T  15513795 tatcaatcaaaaagtgtcgc-aatgttacattattagaacactttttgtatcactagtaacaattaaaaagtgttacgtttataatttttgagaagttgt 15513893  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    |||||||||||| ||| ||||| |||| ||        ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513894 aaaaagtgtcgc-aaactgtctcaactaaaaaattttgaatctatcaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 15513992  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||||||||||||||||||||||||||||||||||    
T  15513993 aagttttaataactagtttgaattacatactcta 15514026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30267031 - 30267375
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |    
T  30267031 caagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttttagttacattttatagtactatccg 30267130  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||||||||| ||||||||||| |||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||||||    
T  30267131 taacaatcaaaaagtgtcgcaaatgttacactattgtaacactttttgtataactagtaacaataaaaaagtgttacatttataaattttaagaagttgt 30267230  T
Q  201 aaaaagtgtcgcaaaattgtctaaacta-annnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||| |||||||||| || |||| |        ||| ||| ||| || ||||||||||||||||||||||||||||||||||  |||||||| ||    
T  30267231 aaaaagtgtggcaaaattgtttagactataatttttttaatctacaaaaattttctttgcttagacttcattcatatttgaattaac--atattagagac 30267328  T
Q  300 aagttttaataactagtttgaattacatactctataaaagttcccct 346  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||||    
T  30267329 aagttttaataaccaatttgaattacatactctataaaatttcccct 30267375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 44920989 - 44921212
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||||||||||||||||||||||| ||||| | |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  44920989 aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagagttttagttacattttatagtactatccgtaac 44921088  T
Q  105 aatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaa 204  Q
    ||| ||||||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44921089 aataaaaaaatgtcgcaaatgttacactattgtaacactttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaa 44921188  T
Q  205 agtgtcgcaaaattgtctaaacta 228  Q
    | ||||||||||||||||| ||||    
T  44921189 attgtcgcaaaattgtctagacta 44921212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 7718213 - 7718412
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |    
T  7718213 caagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagagttttaattacattttatagtactatccg 7718312  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcactt-gtaacaataaaaaagtgttacatttataatttttgaggagttg 199  Q
    ||| ||| ||||||||||||||||| | | ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||||    
T  7718313 taataataaaaaaatgtcgcaaatgttgcattattgtaacactttttgtatcacttaataacaataaaaaa-tgttacatttataatttttgagaagttg 7718411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 7702461 - 7702678
Alignment:
Q  5 aaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaac 104  Q
    |||||||||| |||||||| |||| |||| ||| ||||||||||| |||||||| | ||||||||| | |||||||||||||| ||||| ||||||||||    
T  7702461 aaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaagagctttagttacattttgtagtattatctgtaac 7702560  T
Q  105 aatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgtaaa 203  Q
    | | ||||| ||||| ||| || ||| ||||| ||||||||||||||||||| |||||| ||||||  | |||||||||||||||||||| |||||||||    
T  7702561 atttaaaaattgtcgtaaaatgttacattattataacactttttgtatcactcgtaacactaaaaagttattacatttataatttttgagaagttgtaaa 7702660  T
Q  204 aagtgtcgcaaaattgtc 221  Q
    || |||||||||||||||    
T  7702661 aaatgtcgcaaaattgtc 7702678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 31342545 - 31342451
Alignment:
Q  260 ttagacttcattcatatttgaattaaccaatattagatacaagttttaataactagtttgaattacatactctataaaagttcccctcttctctg 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31342545 ttagacttcattcatatttgaattaaccaatattagatacaagttttaataactagtttgaattacatactctataaaagttcccctcttctctg 31342451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24479180 - 24479400
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    ||||| || ||||||||||||||||||| |||| |||||||||| |||| |||||| ||||||||||||| | |||||||| ||||||||||| |||||     
T  24479180 caagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaagagctttagttatattttatagtattatcta 24479279  T
Q  101 taacaatcaaaaaatgtcgcaaatgg-taccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttg 199  Q
    ||||| ||||||| ||||| ||| || |||  |||||||||| |||||||| |||   ||||||| ||||| | |||||||||| ||||||  | |||||    
T  24479280 taacattcaaaaagtgtcgtaaaaggttacactattgtaacattttttgtaccaccattaacaattaaaaaattttacatttatcatttttatgaagttg 24479379  T
Q  200 taaaaagtgtcgcaaaattgt 220  Q
    |||| | ||| ||||||||||    
T  24479380 taaacaatgttgcaaaattgt 24479400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 22966558 - 22966775
Alignment:
Q  6 aaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgtaaca 105  Q
    ||||| |||||||| ||||||||  ||| || |||||||||||| |||||||| |||||||||||   ||||||||||||||| |||| |||||||||||    
T  22966558 aaaatattactaatgaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagacctttagttacattttagagtattatctgtaaca 22966657  T
Q  106 atcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgttacatttataatttttgaggagttgtaaa 203  Q
     || ||||||| ||| ||||| |||| ||| | ||||||||||  |||||  |||||| | |||||| |||| ||||||| ||||||||| |||||  ||    
T  22966658 ttcgaaaaatgccgcaaaatgttacc-tatagcaacacttttttaatcaccagtaacattaaaaaaaatgttgcatttatcatttttgagaagttg-gaa 22966755  T
Q  204 aagtgtcgcaaaattgtcta 223  Q
    ||||||||||||||||||||    
T  22966756 aagtgtcgcaaaattgtcta 22966775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 44921419 - 44921518
Alignment:
Q  245 caaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatacaagttttaataactagtttgaattacatactctataaaagttccc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||| | | ||||||||||| | ||||||||||||||||||||||| |||||    
T  44921419 caaatttgtctttgcttagacttcattcatatttgaattaac--atattagagaaatgttttaataaccaatttgaattacatactctataaaatttccc 44921516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27151304 - 27151092
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||| |||||||||| ||||  ||||||| ||||||||     || |||| ||| ||||||| | ||  || ||||||||||||| |  |||    
T  27151304 caagaaaaatgtcactaattaaaattagtgacacttgtacaattgt-----aacgcccatgtcactaaagagcttcggtaacattttatagtatt--ctg 27151212  T
Q  101 taacaatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaag-tgttacatttataatttttgaggagtt 198  Q
    ||| | ||||||  ||||| ||| || ||||||||||||||||||||||||||||  |||||| |||||||  | ||||||||||||||||| || ||||    
T  27151211 taaaattcaaaatgtgtcgtaaaatgttaccttattgtaacactttttgtatcaccggtaacactaaaaaaaatattacatttataatttttaagaagtt 27151112  T
Q  199 gtaaaaagtgtcgcaaaatt 218  Q
    ||||||||||||||||||||    
T  27151111 gtaaaaagtgtcgcaaaatt 27151092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40016619 - 40016840
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg-ttttagttacattttatagtactatct 99  Q
    |||| ||||||||||| ||||||||||| |||| ||||| ||||||||| ||||| || | ||||||||| | ||||| ||||||||||| ||| |||||    
T  40016619 caagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagagattttaattacattttattgtattatct 40016718  T
Q  100 gtaacaatcaaaaaatgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagtt 198  Q
    |||||| ||||||| | |||  ||||| ||| ||||      | |||| | ||||   |||||||||||||| | |||||||||||||||| ||| | ||    
T  40016719 gtaacattcaaaaagtatcgtaaaatgttacattat-----aatttttagcatcatcagtaacaataaaaaaatattacatttataattttcgagaaatt 40016813  T
Q  199 gtaaaaagtgtcgcaaaattgtctaaa 225  Q
    ||||||  |||  ||||||||||||||    
T  40016814 gtaaaatatgttacaaaattgtctaaa 40016840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 11017486 - 11017598
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    ||||||| ||||||||||||||||||| |||| |||| |||||||||| ||||| |||||||||||||  | || ||| ||| ||||||||| |||| ||    
T  11017486 aagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaaaagcttcagtaacactttatagtattatcagt 11017585  T
Q  102 aacaatcaaaaaa 114  Q
    |||| | ||||||    
T  11017586 aacatttaaaaaa 11017598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41573421 - 41573489
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 69  Q
    |||||||||||||||||||||||||||| |||| || |||||||||||| |||| ||||||||||||||    
T  41573421 caagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaaccccgtgttactaaa 41573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 26734904 - 26734992
Alignment:
Q  143 tttttgtatcacttgtaacaataaaaaagtgttac--atttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 229  Q
    ||||||||||| | |||||| |||||||  || ||  |||||||||| ||||| ||||||| ||||||||||||| ||||||| |||||    
T  26734904 tttttgtatcattagtaacattaaaaaaaagtcacttatttataattattgagaagttgtataaagtgtcgcaaagttgtctagactaa 26734992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 22967005 - 22967041
Alignment:
Q  260 ttagacttcattcatatttgaattaaccaatattaga 296  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22967005 ttagacttcattcatatttgaattcaccaatattaga 22967041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 26734776 - 26734887
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||  ||| |||||||||||||||| | ||||| ||||||||| ||||| || | ||| ||||| | ||||||  ||||||| | || |||| |    
T  26734776 caagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaaagtccatattattaaagagctttagtatcattttacaatattatcag 26734875  T
Q  101 taacaatcaaaa 112  Q
    ||||| ||||||    
T  26734876 taacattcaaaa 26734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 819 - 486
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||     
T  819 caagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttttagttacattttatagtattatcta 720  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||||||||||| ||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  719 taacaattaaaaagtgtcgcaaatgttacattattggaacactttttgtatcactagtaacaatgaaaaagtgttacatttataatttttgagtagttgt 620  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    ||||||||||||||||||||||| | | ||        ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  619 aaaaagtgtcgcaaaattgtctagattaaatttttttgaatctaccaaatttgtcttcgcttaaacttcattcatatttgaattaaccaatattagatac 520  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    ||| ||||||||| ||||||| ||||||||||||    
T  519 aagatttaataacaagtttgatttacatactcta 486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 40770 - 40437
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||    
T  40770 caagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttttagttacattttatagtattatctg 40671  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| |||| |||||| ||| |||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||    
T  40670 taacaattaaaaagtgtctcaaatgttacattatcgtaacactttttgtatcactagtaacaatgaaaaagttttacatttataatttttgagaagttgt 40571  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
    |||||||||| |||||||||||| | | ||        ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  40570 aaaaagtgtcccaaaattgtctagattaaatttttttgaatctaccaaatttgtcttcgcttaaacttcattcatatttgaattaaccaatattagatac 40471  T
Q  300 aagttttaataactagtttgaattacatactcta 333  Q
    |||||||| |||| ||||||||||||||||||||    
T  40470 aagttttagtaacaagtttgaattacatactcta 40437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 51758781 - 51759083
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||| |||||||||||||||||||| |||||||| |||| |||||| ||| ||||||||| |||||||||||||||||||||| ||||||    
T  51758781 caagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagagttttagttacattttatagtattatctg 51758880  T
Q  101 taacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    ||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||    
T  51758881 taacaattaaaaagtgttgcaaatgttacattattgtaacactttttgtatcaccagtaacaataaaaaagtgttacatttatgatttttgagaagttgt 51758980  T
Q  201 aaaaagtgtcgcaaaattgtctaaact-aannnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattagatac 299  Q
       ||||||| |||||||||||| ||| ||        ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51758981 --gaagtgtcacaaaattgtctagactaaatttttttgaatctaccaaa-ttgtctttgcttagacttcattcatatttcaattaaccaatattagatac 51759077  T
Q  300 aagttt 305  Q
    ||||||    
T  51759078 aagttt 51759083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 13208641 - 13208858
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgtttta--gttacattttatagtactatct 99  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||| |||| ||||||||||||||||||||||  |||| |||||||| |||||||     
T  13208641 aagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaagtgttttatagttatattttataatactatca 13208740  T
Q  100 gtaacaatcaaaaaatgtcgcaaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttg 199  Q
    |||||||| ||||| |||  |||||| || |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||    
T  13208741 gtaacaataaaaaagtgtaacaaatgttatcttattgtaaaactttttgtatcacttgtgacaataaaaaagtgttatatttataa-ttttgagaagttg 13208839  T
Q  200 taaaaagtgtcgcaaaatt 218  Q
    |||| ||| ||| ||||||    
T  13208840 taaatagtatcgtaaaatt 13208858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18308176 - 18308397
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||  |||| | |||  |||| ||  ||||||||||| ||||||| |||||||| ||| | |||||||||||||||||||| | | ||    
T  18308176 caagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaagcctgtgttactgaagggctttagttacattttatagtattgtttg 18308275  T
Q  101 taacaatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttg 199  Q
    ||||| ||||||| |||| |||| || ||| ||||||||||||||||||||||||   ||||| || |||| |||||||||||||||||||||| ||||     
T  18308276 taacattcaaaaagtgtcacaaaatgttacattattgtaacactttttgtatcaccgataacactagaaaaatgttacatttataatttttgagaagtta 18308375  T
Q  200 taaaaagtgtcgcaaaattgtc 221  Q
    |||||||||| ||||| |||||    
T  18308376 taaaaagtgttgcaaagttgtc 18308397  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 897484 - 897779
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||| ||| |  | ||||||||||| | | |||||||||||||||  | ||| |||    
T  897484 aagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaa-gttcatgttactaaagagctatagttacattttatacaattatttgt 897582  T
Q  102 aacaatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgttacatttataatttttgaggagttgt 200  Q
    |||| | ||||| | ||||||| || ||| ||||||||||||||||||||||||  |||||||| ||||| |||||||||||   |||||    ||||||    
T  897583 aacattaaaaaattctcgcaaaatgttacattattgtaacactttttgtatcaccagtaacaattaaaaaatgttacatttagtttttttttaaagttgt 897682  T
Q  201 aaaaagtgtcgcaaaattgtctaaactaa-nnnnnnnnaatttaccaaatttgtctttgcttagacttcattcatatttgaattaaccaatattaga 296  Q
    ||||||||| |||||||  | || || ||         |||||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||    
T  897683 aaaaagtgttgcaaaataatatagaccaatgaattgtgaatttaccaaatttgtttttgcttagacttcattcatatttaaattaactagtattaga 897779  T

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Target: chr1; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 28636931 - 28637101
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctg 100  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||||| ||||| |  |||| |||||| | |||||||||||||||||||| |||||     
T  28636931 caagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtcactgttgctaaagagatttagttacattttatagtaatatcta 28637030  T
Q  101 taacaatcaaaaaatgtcgca-aatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 170  Q
      ||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||  |||| |||||||||    
T  28637031 cgacaatcaaaaagtgtcgcacaatgttacattattgtaacactttttgtatcaccagtaataataaaaaa 28637101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 39368712 - 39368519
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttaca-ttttatagtactatct 99  Q
    ||||||||||||||||||||||| ||||  ||| ||  |||||||||||  ||||| | || |||||||| | || ||||||| |||||||||| ||||     
T  39368712 caagaaaaatgttactaattaaaattagtcacatttatacaattgttaggcaaagcacatgctactaaagagcttcagttacatttttatagtattatca 39368613  T
Q  100 gtaacaatcaaaaaatgtcgc-aaatggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgttacatttataatttttg 191  Q
    |||||| | ||||| |||||| ||||| ||| ||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||||||    
T  39368612 gtaacatttaaaaagtgtcgcaaaatgttacattattgtaacactttttgtatcaccggtaacactaaaaaaaatgttacatttataatttttg 39368519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12189980 - 12190072
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagta 93  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||| |  ||||||||||    
T  12189980 caagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaagagttttagtaattttttatagta 12190072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 1843981 - 1844089
Alignment:
Q  2 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagtactatctgt 101  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||||||||| |||| ||| ||||||| ||| | |||| || |||||||||||| |||||||    
T  1843981 aagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaaccccatgttactgaagggctttaattgcattttatagtattatctgt 1844080  T
Q  102 aacaatcaa 110  Q
    |||||||||    
T  1844081 aacaatcaa 1844089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16222806 - 16222881
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgtttt 76  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||    
T  16222806 caagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaagagtttt 16222881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5911736 - 5911679
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagccc 58  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  5911736 caagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaaagccc 5911679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 28637571 - 28637633
Alignment:
Q  167 aaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 229  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||| |||||    
T  28637571 aaaattgttacattcataatttttgagtagttgtaaaaagtgtcgcaaaattatctagactaa 28637633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 3399653 - 3399703
Alignment:
Q  4 gaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 54  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  3399653 gaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 3399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15204622 - 15204675
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 54  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||    
T  15204622 caagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaa 15204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17112953 - 17113019
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttacta 67  Q
    ||||||||||  ||||| |||||||| | |||||||||||||||||||| |||||| | ||||||||    
T  17112953 caagaaaaatagtactagttaaattttgtaacacttgaacaattgttagttaaagctcatgttacta 17113019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 17113133 - 17113184
Alignment:
Q  178 atttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 229  Q
    ||||||||||| |||  ||||||||||||||||||||| ||||||| |||||    
T  17113133 atttataatttgtgaaaagttgtaaaaagtgtcgcaaagttgtctagactaa 17113184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15214355 - 15214401
Alignment:
Q  1 caagaaaaatgttactaattaaatttagcaacacttgaacaattgtt 47  Q
    |||||||||| ||||||||||||||||| || | |||||||||||||    
T  15214355 caagaaaaattttactaattaaatttagtaatatttgaacaattgtt 15214401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 47694789 - 47694737
Alignment:
Q  176 acatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 229  Q
    |||||||||||||| ||| ||||||||||||| ||||||| ||||||| |||||    
T  47694789 acatttataatttt-gagaagttgtaaaaagtatcgcaaagttgtctagactaa 47694737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 438 - 347
Alignment:
Q  253 tctttgcttagacttcattcatatttgaattaaccaatattagatacaagttttaataactagtttgaattacatactctataaaagttcccct 346  Q
    ||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  438 tctttgcttagacttcattcatatttgaattaac--atattagagacaagttttaataaccaatttgaattacatactctataaaatttcccct 347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 446346 - 446263
Alignment:
Q  10 tgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacattttatagta 93  Q
    |||||| |||||||||| | |||| |||||||||||||||  |||| || | ||||||||| | |||||| ||| |||||||||    
T  446346 tgttaccaattaaatttggtaacatttgaacaattgttaggaaaagtccatattactaaagagctttagtaacactttatagta 446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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