View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6000_low_8 (Length: 338)

Name: NF6000_low_8
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6000_low_8
NF6000_low_8
[»] chr8 (8 HSPs)
chr8 (20-310)||(40512583-40512882)
chr8 (203-250)||(574376-574423)
chr8 (203-250)||(6038297-6038344)
chr8 (210-245)||(39201447-39201482)
chr8 (217-250)||(3757979-3758012)
chr8 (209-250)||(24195247-24195288)
chr8 (222-250)||(18422475-18422503)
chr8 (211-251)||(33445570-33445610)
[»] chr4 (10 HSPs)
chr4 (209-250)||(27655729-27655770)
chr4 (211-251)||(41346756-41346796)
chr4 (216-250)||(20403190-20403224)
chr4 (209-250)||(7282555-7282596)
chr4 (209-250)||(27871400-27871441)
chr4 (209-250)||(52936639-52936680)
chr4 (211-251)||(14136091-14136131)
chr4 (211-251)||(25999397-25999437)
chr4 (211-251)||(35151457-35151497)
chr4 (210-250)||(42756128-42756168)
[»] chr7 (8 HSPs)
chr7 (204-250)||(43539126-43539172)
chr7 (204-250)||(8318834-8318880)
chr7 (202-251)||(964762-964811)
chr7 (217-250)||(29734812-29734845)
chr7 (217-250)||(37307896-37307929)
chr7 (211-252)||(45914401-45914442)
chr7 (211-251)||(2391007-2391047)
chr7 (214-250)||(27908742-27908778)
[»] chr1 (9 HSPs)
chr1 (205-250)||(13401591-13401636)
chr1 (203-251)||(50372382-50372430)
chr1 (212-250)||(13779579-13779617)
chr1 (217-250)||(3528491-3528524)
chr1 (209-250)||(12213991-12214032)
chr1 (216-252)||(14392-14428)
chr1 (211-247)||(6818943-6818979)
chr1 (211-251)||(32030926-32030966)
chr1 (214-250)||(50533074-50533110)
[»] chr2 (9 HSPs)
chr2 (211-251)||(30243250-30243290)
chr2 (211-250)||(22571887-22571926)
chr2 (205-250)||(23782861-23782906)
chr2 (211-251)||(9459078-9459118)
chr2 (222-250)||(29896316-29896344)
chr2 (211-251)||(30089049-30089089)
chr2 (211-251)||(30125653-30125693)
chr2 (210-250)||(30799110-30799150)
chr2 (214-250)||(37984358-37984394)
[»] scaffold0350 (1 HSPs)
scaffold0350 (203-250)||(1240-1287)
[»] chr3 (6 HSPs)
chr3 (211-250)||(33223868-33223907)
chr3 (204-250)||(25441522-25441568)
chr3 (210-251)||(1501449-1501490)
chr3 (198-251)||(12131694-12131747)
chr3 (209-250)||(25289335-25289376)
chr3 (205-250)||(31214628-31214673)
[»] chr6 (2 HSPs)
chr6 (211-249)||(19277574-19277612)
chr6 (210-250)||(14945535-14945575)
[»] chr5 (3 HSPs)
chr5 (216-250)||(29962363-29962397)
chr5 (216-250)||(30012401-30012435)
chr5 (214-251)||(3416582-3416619)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 40512882 - 40512583
Alignment:
Q  20 gctttttcctgagttagtggactgggcagaacgacacatctttggcctttggcaaaagccttcttgtaagaacagcgatcttcgtatgtctaagaataac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  40512882 gctttttcctgagttagtggactgggcagaacgacacatctttggcctttggcaaaagccttcctgtaagaacggcgatcttcgtatgtctaagaataac 40512783  T
Q  120 caagcgtttaagacagaataataagacaaaattactcttgtgtcgtggtatcttgatttaatttcatatgtaaactgttgttaatgtctttgtgaactta 219  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  40512782 caagcgcttaagacagaataataagacaaaattactctcgtgtcgtggtatcttaatttaatttcatatgtaaactgttgttagtgtctttgtgagctta 40512683  T
Q  220 gctcagttgatagaaacaatgcataatatata---------agaccaccataaaaaatatacaacctgttggtgtttaaatctatcatccttcacttatg 310  Q
     |||||||| |||| ||||| |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512682 actcagttggtagagacaatacataatatatacaaggtatgagaccaccataaaaaatatacaacctgttggtgtttaaatctatcatccttcacttatg 40512583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 574376 - 574423
Alignment:
Q  203 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||    
T  574376 atgtccttgtgagcttagctcagttgatatagacaatgcataatatat 574423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 6038344 - 6038297
Alignment:
Q  203 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||    
T  6038344 atgtcttcgtgaacttagctcagttgatatggacaatgcataatatat 6038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 39201447 - 39201482
Alignment:
Q  210 tgtgaacttagctcagttgatagaaacaatgcataa 245  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39201447 tgtgatcttagctcagttgatagaaacaatgcataa 39201482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 3758012 - 3757979
Alignment:
Q  217 ttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||| |||||||||||||||||    
T  3758012 ttagctcagttgataggaacaatgcataatatat 3757979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 24195247 - 24195288
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  24195247 ttgtgaacttagctcagttgatatgaacaatacataatatat 24195288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 18422503 - 18422475
Alignment:
Q  222 tcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||||||||||||    
T  18422503 tcagttgatagaaacaatgcataatatat 18422475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 33445570 - 33445610
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  33445570 gtgagcttagctcagttggtaggaacaatgcataatatata 33445610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 27655729 - 27655770
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  27655729 ttgtgaacttagttcagttgatagaaacaatgcataatatat 27655770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 41346756 - 41346796
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  41346756 gtgaacttaactcaattgatagaaacaatgcataatatata 41346796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 20403224 - 20403190
Alignment:
Q  216 cttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||||| |||||||||||||||||    
T  20403224 cttagctcagttgataggaacaatgcataatatat 20403190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 7282555 - 7282596
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  7282555 ttgtgaacttagctcagttggtatgaacaatgcataatatat 7282596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 27871441 - 27871400
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||| |||||||| |||||| |||||||||    
T  27871441 ttgtgaacttagctcatttgatagagacaatgtataatatat 27871400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 52936639 - 52936680
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||| |||| |||||||||||||||||||| |||||||||    
T  52936639 ttgtgagcttaactcagttgatagaaacaatgtataatatat 52936680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 14136091 - 14136131
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  14136091 gtgagcttagctcagttgataaagacaatgcataatatata 14136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 25999397 - 25999437
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  25999397 gtgaacttagctcagttggtagggacaatgcataatatata 25999437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 35151457 - 35151497
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  35151457 gtgaacttagctcagtttatataaacaatgcataaaatata 35151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 42756168 - 42756128
Alignment:
Q  210 tgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||||||||||   ||||||||||||||||    
T  42756168 tgtgaacttagctcagttgataaggacaatgcataatatat 42756128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 43539172 - 43539126
Alignment:
Q  204 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||    
T  43539172 tgtccttgtgagcttagctcagttgataggaacaatgcataatatat 43539126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 8318834 - 8318880
Alignment:
Q  204 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||| ||||| |||| ||||||||||||||||||||||||| ||||    
T  8318834 tgtctctgtgagcttaactcagttgatagaaacaatgcataacatat 8318880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 964811 - 964762
Alignment:
Q  202 aatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||| | |||| |||| |||||| ||||||||||||||||||||||||    
T  964811 aatgtcctcgtgagcttaactcagtcgatagaaacaatgcataatatata 964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 29734845 - 29734812
Alignment:
Q  217 ttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||| |||||||||||||||||||||||    
T  29734845 ttagctcagtcgatagaaacaatgcataatatat 29734812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 37307929 - 37307896
Alignment:
Q  217 ttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||| |||||||||||||||||    
T  37307929 ttagctcagttgataggaacaatgcataatatat 37307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 45914442 - 45914401
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatataa 252  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  45914442 gtgaacttagtttagttgatagagacaatgcataatatataa 45914401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 2391007 - 2391047
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  2391007 gtgaacttagctcagttggtaagaacaatgcataatatata 2391047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 27908778 - 27908742
Alignment:
Q  214 aacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  27908778 aacttaactcagttgatagaaacaatgcttaatatat 27908742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 13401591 - 13401636
Alignment:
Q  205 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||    
T  13401591 gtctttgtgagcttagttcagttgatagagacaatgcataatatat 13401636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 50372430 - 50372382
Alignment:
Q  203 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    ||||| ||| || |||||||||||||||| |||||||||||||||||||    
T  50372430 atgtcattgcgagcttagctcagttgatataaacaatgcataatatata 50372382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 13779579 - 13779617
Alignment:
Q  212 tgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  13779579 tgaacttagctcagttgatatagacaatgcataatatat 13779617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 3528524 - 3528491
Alignment:
Q  217 ttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||||||| |||||||||    
T  3528524 ttagctcagttgatagaaacaatgtataatatat 3528491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 12213991 - 12214032
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||| ||||||||||||||||| |||||| ||||||||||    
T  12213991 ttgtgagcttagctcagttgataggaacaatacataatatat 12214032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14392 - 14428
Alignment:
Q  216 cttagctcagttgatagaaacaatgcataatatataa 252  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14392 cttagctcagttggtataaacaatgcataatatataa 14428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 6818943 - 6818979
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataata 247  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  6818943 gtgagctttgctcagttgatagaaacaatgcataata 6818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 32030966 - 32030926
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  32030966 gtgaacttagctcagttgttagggacaatgcataatatata 32030926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 50533074 - 50533110
Alignment:
Q  214 aacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  50533074 aacttagctcagttggtagaaacattgcataatatat 50533110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30243250 - 30243290
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  30243250 gtgaacttagctcagttggtagagacaatgcataatatata 30243290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 22571926 - 22571887
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  22571926 gtgaacttagctcagttgatatagacaatgcataatatat 22571887  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 23782861 - 23782906
Alignment:
Q  205 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||| |||||||| |||| ||| |||||||||||||||||    
T  23782861 gtctttgtgatcttagctctgttggtaggaacaatgcataatatat 23782906  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 9459118 - 9459078
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  9459118 gtgagcttagctcagttgataaagacaatgcataatatata 9459078  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 29896344 - 29896316
Alignment:
Q  222 tcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||||||||||||    
T  29896344 tcagttgatagaaacaatgcataatatat 29896316  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30089049 - 30089089
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  30089049 gtgaacttagctcagttggtagggacaatgcataatatata 30089089  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30125653 - 30125693
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  30125653 gtgaacttagctcagttggtagggacaatgcataatatata 30125693  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 30799150 - 30799110
Alignment:
Q  210 tgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  30799150 tgtgaacttatttcagttggtagaaacaatgcataatatat 30799110  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 37984358 - 37984394
Alignment:
Q  214 aacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37984358 aacttagctcagttggtataaacaatgcataatatat 37984394  T

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Target: scaffold0350 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 1240 - 1287
Alignment:
Q  203 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||    
T  1240 atgtcttcgtgaacttagctcagttgatatggacaatgcataatatat 1287  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 33223868 - 33223907
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  33223868 gtgagcttagctcagttggtagaaacaatgcataatatat 33223907  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 25441568 - 25441522
Alignment:
Q  204 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||    
T  25441568 tgtctttgtgaacttagctcagttggtatggacaatgcataatatat 25441522  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 1501449 - 1501490
Alignment:
Q  210 tgtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  1501449 tgtgaacttagctcagttaataaagacaatgcataatatata 1501490  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 12131747 - 12131694
Alignment:
Q  198 tgttaatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 251  Q
    ||||||||||||||||| ||||| ||| ||| || | |||||||||||||||||    
T  12131747 tgttaatgtctttgtgagcttagttcaattggtatagacaatgcataatatata 12131694  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 25289376 - 25289335
Alignment:
Q  209 ttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||||||| || |||||||| |||||||||    
T  25289376 ttgtgaacttagctcagttggtaaaaacaatgtataatatat 25289335  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 31214628 - 31214673
Alignment:
Q  205 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||    
T  31214628 gtctttgtgaacttagttaagttggtagaaataatgcataatatat 31214673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 19277574 - 19277612
Alignment:
Q  211 gtgaacttagctcagttgatagaaacaatgcataatata 249  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  19277574 gtgaacttaactcagttgataggaacaatgcataatata 19277612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 14945575 - 14945535
Alignment:
Q  210 tgtgaacttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  14945575 tgtgagcttagctcagttgatagagacagtgcataatatat 14945535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 29962363 - 29962397
Alignment:
Q  216 cttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||||||||||||| |||||||||    
T  29962363 cttagctcagttgatagaaacaatgtataatatat 29962397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 30012435 - 30012401
Alignment:
Q  216 cttagctcagttgatagaaacaatgcataatatat 250  Q
    ||||||||||||||||||||||||| |||||||||    
T  30012435 cttagctcagttgatagaaacaatgtataatatat 30012401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 3416619 - 3416582
Alignment:
Q  214 aacttagctcagttgatagaaacaatgcataatatata 251  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  3416619 aacttaactcagttgatagaaacaatgtataatatata 3416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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