View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6000_low_9 (Length: 325)

Name: NF6000_low_9
Description: NF6000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6000_low_9
NF6000_low_9
[»] chr8 (33 HSPs)
chr8 (140-306)||(5110871-5111037)
chr8 (24-112)||(18020053-18020141)
chr8 (56-111)||(34313765-34313820)
chr8 (11-111)||(15156136-15156239)
chr8 (11-111)||(41662354-41662457)
chr8 (56-111)||(12281423-12281480)
chr8 (16-109)||(765736-765832)
chr8 (63-112)||(6092776-6092825)
chr8 (56-109)||(23123514-23123567)
chr8 (16-112)||(12281123-12281222)
chr8 (62-111)||(22851390-22851441)
chr8 (66-111)||(23123338-23123385)
chr8 (11-111)||(43245871-43245974)
chr8 (56-112)||(15155882-15155940)
chr8 (56-111)||(37752413-37752470)
chr8 (62-112)||(9823364-9823416)
chr8 (57-94)||(9930837-9930874)
chr8 (62-112)||(13026634-13026686)
chr8 (56-108)||(9465871-9465923)
chr8 (62-111)||(9822748-9822799)
chr8 (62-111)||(39724051-39724102)
chr8 (56-107)||(43162536-43162588)
chr8 (11-90)||(74936-75015)
chr8 (63-111)||(3307338-3307388)
chr8 (66-112)||(9465606-9465653)
chr8 (62-112)||(13936722-13936773)
chr8 (56-112)||(41662106-41662164)
chr8 (56-111)||(16929239-16929296)
chr8 (11-45)||(37752183-37752217)
chr8 (62-111)||(43162234-43162284)
chr8 (62-108)||(13027284-13027332)
chr8 (62-112)||(13937392-13937444)
chr8 (62-109)||(74688-74736)
[»] chr7 (25 HSPs)
chr7 (11-111)||(3687608-3687710)
chr7 (16-112)||(9412281-9412380)
chr7 (56-112)||(9412022-9412080)
chr7 (62-111)||(5349736-5349784)
chr7 (62-112)||(30857907-30857959)
chr7 (62-112)||(44600138-44600190)
chr7 (56-111)||(3687353-3687411)
chr7 (62-111)||(44599489-44599540)
chr7 (62-112)||(6908212-6908263)
chr7 (56-110)||(8953886-8953941)
chr7 (62-112)||(13744236-13744287)
chr7 (63-108)||(27096346-27096392)
chr7 (63-108)||(27181911-27181957)
chr7 (62-111)||(48359320-48359370)
chr7 (62-111)||(3204669-3204718)
chr7 (62-112)||(3205096-3205148)
chr7 (62-112)||(8643769-8643821)
chr7 (62-112)||(13863312-13863364)
chr7 (62-112)||(17156966-17157018)
chr7 (62-112)||(20419327-20419379)
chr7 (62-112)||(22740155-22740207)
chr7 (56-108)||(8953605-8953657)
chr7 (67-112)||(13863964-13864011)
chr7 (62-110)||(18925325-18925373)
chr7 (62-94)||(35080226-35080258)
[»] scaffold0110 (2 HSPs)
scaffold0110 (11-112)||(45758-45861)
scaffold0110 (56-112)||(45536-45593)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-111)||(411923-412024)
[»] chr4 (32 HSPs)
chr4 (62-112)||(24775786-24775838)
chr4 (56-112)||(16555514-16555572)
chr4 (11-111)||(16555768-16555871)
chr4 (11-112)||(3930431-3930534)
chr4 (24-110)||(8488447-8488534)
chr4 (63-111)||(11241389-11241439)
chr4 (11-108)||(13198606-13198707)
chr4 (56-112)||(13198903-13198961)
chr4 (56-110)||(22681576-22681631)
chr4 (56-110)||(7603146-7603200)
chr4 (59-111)||(7603419-7603472)
chr4 (62-112)||(22681882-22681934)
chr4 (24-112)||(35393741-35393830)
chr4 (62-112)||(50678778-50678830)
chr4 (62-112)||(56505692-56505744)
chr4 (59-112)||(56506574-56506629)
chr4 (56-111)||(27304718-27304773)
chr4 (62-112)||(23539840-23539890)
chr4 (56-107)||(49178813-49178866)
chr4 (62-112)||(293220-293272)
chr4 (62-112)||(9023683-9023735)
chr4 (59-112)||(25162313-25162366)
chr4 (62-112)||(36095816-36095868)
chr4 (62-108)||(36096478-36096526)
chr4 (62-112)||(39744468-39744520)
chr4 (66-112)||(45830203-45830251)
chr4 (56-111)||(3930179-3930235)
chr4 (62-111)||(5206233-5206283)
chr4 (59-112)||(9380741-9380796)
chr4 (11-43)||(11241641-11241673)
chr4 (62-111)||(23540255-23540306)
chr4 (62-111)||(50679427-50679478)
[»] chr2 (31 HSPs)
chr2 (11-112)||(30190922-30191026)
chr2 (56-112)||(26737481-26737537)
chr2 (56-112)||(20347461-20347519)
chr2 (62-111)||(6171156-6171206)
chr2 (62-112)||(7979566-7979616)
chr2 (63-109)||(15321394-15321440)
chr2 (62-112)||(2639485-2639537)
chr2 (62-112)||(6495724-6495776)
chr2 (62-112)||(18296696-18296748)
chr2 (62-112)||(26841586-26841638)
chr2 (11-108)||(40469680-40469780)
chr2 (16-112)||(24832330-24832429)
chr2 (62-112)||(29230281-29230333)
chr2 (62-111)||(32672842-32672893)
chr2 (57-108)||(32673141-32673193)
chr2 (56-112)||(11883622-11883680)
chr2 (56-108)||(15920781-15920835)
chr2 (62-112)||(17346038-17346089)
chr2 (56-111)||(11883923-11883980)
chr2 (56-111)||(30191222-30191279)
chr2 (56-108)||(43495481-43495535)
chr2 (62-112)||(2638819-2638871)
chr2 (62-112)||(6171459-6171511)
chr2 (62-112)||(8851585-8851637)
chr2 (62-112)||(20347162-20347214)
chr2 (62-90)||(7591853-7591881)
chr2 (62-111)||(7664676-7664727)
chr2 (56-108)||(17345736-17345788)
chr2 (62-108)||(18055319-18055367)
chr2 (62-111)||(26842241-26842292)
chr2 (62-108)||(29343584-29343632)
[»] chr1 (25 HSPs)
chr1 (11-112)||(47955305-47955409)
chr1 (56-112)||(17518302-17518359)
chr1 (11-109)||(17518555-17518653)
chr1 (11-111)||(41082909-41083011)
chr1 (62-112)||(8108996-8109048)
chr1 (56-112)||(13589656-13589713)
chr1 (24-112)||(22149402-22149490)
chr1 (62-112)||(39692003-39692055)
chr1 (56-112)||(41083208-41083265)
chr1 (62-112)||(49284408-49284460)
chr1 (62-111)||(6002237-6002288)
chr1 (62-111)||(48190771-48190822)
chr1 (56-108)||(1176839-1176893)
chr1 (62-112)||(20480167-20480218)
chr1 (56-112)||(31848189-31848247)
chr1 (56-112)||(47955605-47955663)
chr1 (57-108)||(8108724-8108777)
chr1 (62-112)||(20371039-20371089)
chr1 (62-111)||(50615624-50615674)
chr1 (62-111)||(50623452-50623502)
chr1 (16-45)||(8108978-8109007)
chr1 (62-112)||(48191358-48191410)
chr1 (62-111)||(26814694-26814745)
chr1 (62-110)||(46056904-46056952)
chr1 (62-111)||(48105119-48105170)
[»] scaffold0802 (2 HSPs)
scaffold0802 (11-111)||(1371-1474)
scaffold0802 (56-111)||(1118-1175)
[»] chr3 (23 HSPs)
chr3 (11-98)||(10293623-10293711)
chr3 (11-111)||(20968971-20969073)
chr3 (56-111)||(10293906-10293963)
chr3 (59-111)||(28702278-28702331)
chr3 (63-112)||(36180555-36180604)
chr3 (62-112)||(47665910-47665962)
chr3 (62-111)||(8314013-8314064)
chr3 (62-112)||(8315085-8315136)
chr3 (56-112)||(20968717-20968775)
chr3 (62-112)||(47871125-47871176)
chr3 (56-108)||(1101087-1101141)
chr3 (62-111)||(3353128-3353178)
chr3 (60-112)||(17441064-17441118)
chr3 (11-45)||(18874958-18874992)
chr3 (62-111)||(21896514-21896564)
chr3 (62-111)||(42673299-42673349)
chr3 (62-108)||(14015697-14015745)
chr3 (56-108)||(26540694-26540747)
chr3 (63-111)||(42627550-42627599)
chr3 (62-112)||(53687887-53687939)
chr3 (59-111)||(53688303-53688356)
chr3 (62-111)||(3644786-3644837)
chr3 (62-110)||(17372597-17372645)
[»] chr5 (24 HSPs)
chr5 (24-112)||(18433281-18433371)
chr5 (62-112)||(34147140-34147190)
chr5 (62-108)||(23011385-23011432)
chr5 (56-112)||(25175148-25175206)
chr5 (62-108)||(31569910-31569957)
chr5 (56-112)||(33324835-33324893)
chr5 (57-112)||(5187828-5187885)
chr5 (11-112)||(25115756-25115860)
chr5 (62-112)||(25116064-25116116)
chr5 (11-112)||(25174848-25174952)
chr5 (67-111)||(12441320-12441364)
chr5 (11-111)||(18433015-18433118)
chr5 (62-111)||(18817614-18817665)
chr5 (62-112)||(43464195-43464246)
chr5 (62-108)||(9665560-9665606)
chr5 (11-45)||(22429176-22429210)
chr5 (62-111)||(23011079-23011129)
chr5 (11-45)||(34576934-34576968)
chr5 (62-108)||(11351430-11351478)
chr5 (62-112)||(18816951-18817003)
chr5 (62-112)||(19514966-19515018)
chr5 (62-112)||(26020449-26020501)
chr5 (62-112)||(34147513-34147565)
chr5 (56-108)||(12441187-12441242)
[»] scaffold0319 (2 HSPs)
scaffold0319 (11-111)||(6648-6750)
scaffold0319 (56-112)||(6393-6451)
[»] chr6 (16 HSPs)
chr6 (11-112)||(3403940-3404044)
chr6 (56-112)||(18241853-18241911)
chr6 (11-112)||(21031978-21032081)
chr6 (56-112)||(23250591-23250648)
chr6 (62-112)||(33829639-33829691)
chr6 (11-90)||(18242107-18242187)
chr6 (62-111)||(33828990-33829041)
chr6 (62-112)||(10039675-10039726)
chr6 (64-112)||(21032285-21032335)
chr6 (56-111)||(11656779-11656836)
chr6 (63-108)||(31598732-31598778)
chr6 (62-112)||(7654551-7654603)
chr6 (56-112)||(13579648-13579705)
chr6 (60-112)||(2762776-2762828)
chr6 (62-111)||(3403717-3403768)
chr6 (56-111)||(33971994-33972050)
[»] scaffold0192 (1 HSPs)
scaffold0192 (18-112)||(25327-25424)
[»] scaffold0001 (3 HSPs)
scaffold0001 (63-112)||(439203-439254)
scaffold0001 (62-108)||(183367-183414)
scaffold0001 (56-111)||(438930-438987)
[»] scaffold0176 (1 HSPs)
scaffold0176 (64-112)||(20048-20098)
[»] scaffold1221 (1 HSPs)
scaffold1221 (62-111)||(1511-1561)
[»] scaffold0069 (1 HSPs)
scaffold0069 (62-112)||(50074-50124)
[»] scaffold0009 (1 HSPs)
scaffold0009 (56-112)||(205686-205743)
[»] scaffold0535 (1 HSPs)
scaffold0535 (63-112)||(10011-10062)
[»] scaffold0460 (1 HSPs)
scaffold0460 (63-112)||(329-380)
[»] scaffold0376 (1 HSPs)
scaffold0376 (56-111)||(7597-7653)
[»] scaffold0328 (1 HSPs)
scaffold0328 (62-111)||(6798-6849)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 140 - 306
Target Start/End: Original strand, 5110871 - 5111037
Alignment:
Q  140 gccatggatgaatgaaatatagagagaaaggggaagggtttgtgtttcagtcagtgattgattaggtcttcttcttcgacctttacaccttcacttcaat 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5110871 gccatggatgaatgaaatatagagagaaagaggaagggtttgtgtttcagtctgtgattgattaggtcttcttcttcgacctttacaccttcacttcaat 5110970  T
Q  240 ctttacactttcacttcaacaatccaattcaatccaatccaaccaactcaccatgacaggtattccc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5110971 ctttacactttcacttcaacaatccaattcaatccaatccaaccaactcaccatgacaggtattccc 5111037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 18020053 - 18020141
Alignment:
Q  24 aaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||| |        ||||| |||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  18020053 aaaagatggggtgcaaaatcgctcaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagatagggtaaaagtgcaattaagcct 18020141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 34313820 - 34313765
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  34313820 gagggggtgcaaaatcgcacaattaacaaaagataggggaaaagtgcaattaagcc 34313765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 15156136 - 15156239
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaatta 107  Q
    |||| ||||||||||||||||||||||||||||||           ||||| |||||||||||||||||||||||||||||   ||||||||||||||||    
T  15156136 cagaaagggggcaaaaagatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaatta 15156235  T
Q  108 agcc 111  Q
    ||||    
T  15156236 agcc 15156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 41662354 - 41662457
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||   ||||||||||||||||    
T  41662354 cagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaatta 41662453  T
Q  108 agcc 111  Q
    ||||    
T  41662454 agcc 41662457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 12281423 - 12281480
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  12281423 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagcc 12281480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 765832 - 765736
Alignment:
Q  16 agggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaag 109  Q
    |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||   ||||||||||||||||||    
T  765832 agggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaag 765736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 6092825 - 6092776
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  6092825 tgcaaaatcgcacaattgacaaaagatagggggaaaatgcaattaagcct 6092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 23123514 - 23123567
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaag 109  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  23123514 gagggggtgcaaaatcgcacaattagcaaaagataaggggaaagtgcaattaag 23123567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 12281222 - 12281123
Alignment:
Q  16 agggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||||||||| |         ||||  ||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  12281222 agggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcct 12281123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 22851441 - 22851390
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  22851441 gtgcaaaatcgcacaattgacaaaagataggggtgaaaagtgcaattaagcc 22851390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 23123385 - 23123338
Alignment:
Q  66 aaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||    
T  23123385 aaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagcc 23123338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 43245974 - 43245871
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||  ||||||||| |||  |||||||||||||    
T  43245974 cagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagatagggggaaaaagtgcaatta 43245875  T
Q  108 agcc 111  Q
    ||||    
T  43245874 agcc 43245871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 15155940 - 15155882
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  15155940 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 15155882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 37752413 - 37752470
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  37752413 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 37752470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 9823364 - 9823416
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  9823364 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 9823416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 9930837 - 9930874
Alignment:
Q  57 agggagtgcaaaatcgcacaattgacaaaagataaggg 94  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9930837 agggagtgcaaaatcgcacaattaacaaaagataaggg 9930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 13026686 - 13026634
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  13026686 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 13026634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 9465871 - 9465923
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaa 108  Q
    ||||| |||||||||||||||||| |||||||||| || |||| |||||||||    
T  9465871 gagggggtgcaaaatcgcacaattaacaaaagatagggaaaaaatgcaattaa 9465923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 9822799 - 9822748
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    |||||||||||||||||||| |||||||| ||  ||||||||||||||||||    
T  9822799 gtgcaaaatcgcacaattgataaaagataggggtgaaaagtgcaattaagcc 9822748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 39724051 - 39724102
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  39724051 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 39724102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 43162536 - 43162588
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaatta 107  Q
    ||||| |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  43162536 gagggggtgcaaaatcgcacgattgacaaaagatagggggaaaagtgcaatta 43162588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 74936 - 75015
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata 90  Q
    |||| ||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||  |||||||||    
T  74936 cagaaagggggcaaaaagatggggtgcaaaatcgctaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagata 75015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 3307388 - 3307338
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    |||||||||||||||||||||||||||| ||  ||||| ||||||||||||    
T  3307388 tgcaaaatcgcacaattgacaaaagataggggtgaaaaatgcaattaagcc 3307338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 9465653 - 9465606
Alignment:
Q  66 aaaatcgcacaattgacaaaagataag-ggaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  9465653 aaaattgcacaattgacaaaagataggaggaaaagtgcaattaagcct 9465606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 13936773 - 13936722
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcct 112  Q
    |||||||||||||||||||  |||||||| ||| ||||||||||||||||||    
T  13936773 gtgcaaaatcgcacaattggtaaaagatagggggaaaagtgcaattaagcct 13936722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 41662164 - 41662106
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| |||||||||| |||  ||| ||||||||||||||    
T  41662164 gagggggtgcaaaatcgcacaattaacaaaagatatggggaaaatgtgcaattaagcct 41662106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 16929239 - 16929296
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||| ||||||||||||||||||  ||||||||| ||  ||||||||||||||||||    
T  16929239 gagggggtgcaaaatcgcacaattagcaaaagataggggagaaaagtgcaattaagcc 16929296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 37752217 - 37752183
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgc 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  37752217 cagaaagggggcaaaaagatggggtgcaaaatcgc 37752183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 43162284 - 43162234
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    |||||||||||||||||| |||||| |||  ||||||||||||||||||||    
T  43162284 gtgcaaaatcgcacaattaacaaaatatagggggaaaagtgcaattaagcc 43162234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 13027284 - 13027332
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaa 108  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||    
T  13027284 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 13027332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 13937392 - 13937444
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||| ||||||||||||||||| |||   |||||||||||||||||||||    
T  13937392 gtgcaaattcgcacaattgacaaaaaataggggggaaaagtgcaattaagcct 13937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 74736 - 74688
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagat-aagggaaaagtgcaattaag 109  Q
    ||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  74736 gtgcaaaatcgcacaattagcaaaagatggagggaaaagtgcaattaag 74688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 3687608 - 3687710
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaa 108  Q
    |||| |||||||||||||||||||||||||||||| |        ||||| ||||||||||||||||||| |||||||||   |||||||||||||||||    
T  3687608 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 3687707  T
Q  109 gcc 111  Q
    |||    
T  3687708 gcc 3687710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 9412281 - 9412380
Alignment:
Q  16 agggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  9412281 agggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcct 9412380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 9412080 - 9412022
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  9412080 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagcct 9412022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 5349736 - 5349784
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcc 111  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  5349736 gtgcaaaatcgcacaattaacaaaagat-aggggaaagtgcaattaagcc 5349784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 30857907 - 30857959
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    ||||||||| ||||||||||||||||||||| |  ||||||||||||||||||    
T  30857907 gtgcaaaattgcacaattgacaaaagataagagacaaaagtgcaattaagcct 30857959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 44600138 - 44600190
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  44600138 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 44600190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 3687411 - 3687353
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata---agggaaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| ||||||||||    ||||||||||||||||||||    
T  3687411 gagggggtgcaaaatcgcacaattaacaaaagatagggggggaaaagtgcaattaagcc 3687353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 44599540 - 44599489
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  44599540 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 44599489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 6908263 - 6908212
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcct 112  Q
    |||||||||||||||||| |||| ||||| ||| ||||||||||||||||||    
T  6908263 gtgcaaaatcgcacaattaacaatagatagggggaaaagtgcaattaagcct 6908212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 8953886 - 8953941
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagc 110  Q
    ||||| ||||||||| |||||||| |||||||||| ||| ||||||||||||||||    
T  8953886 gagggggtgcaaaattgcacaattaacaaaagatagggggaaaagtgcaattaagc 8953941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 13744236 - 13744287
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||  |||||||||||||||||||||    
T  13744236 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcct 13744287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 27096346 - 27096392
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||    
T  27096346 tgcaaaatcacacaattgacaaaagatagggggaaaagtgcaattaa 27096392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 27181957 - 27181911
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||    
T  27181957 tgcaaaatcacacaattgacaaaagatagggggaaaagtgcaattaa 27181911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 48359370 - 48359320
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  48359370 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcc 48359320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 3204718 - 3204669
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||  ||| ||| ||||||||||||||||    
T  3204718 gtgcaaaatcgcacaattggcaaactatagggggaaagtgcaattaagcc 3204669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 3205096 - 3205148
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  3205096 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 3205148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 8643769 - 8643821
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||  |||||||| ||  |||||||||||||||||||    
T  8643769 gtgcaaaatcgcacaattggtaaaagatagggatgaaaagtgcaattaagcct 8643821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 13863364 - 13863312
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  ||||| |||||||||||||    
T  13863364 gtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcct 13863312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 17157018 - 17156966
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  17157018 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 17156966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 20419327 - 20419379
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  20419327 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 20419379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 22740207 - 22740155
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  22740207 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 22740155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 8953657 - 8953605
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaa 108  Q
    |||| |||||||||||||| ||||| ||||||||  ||| |||||||||||||    
T  8953657 gaggaagtgcaaaatcgcataattgtcaaaagatcgggggaaagtgcaattaa 8953605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 13863964 - 13864011
Alignment:
Q  67 aaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    |||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  13863964 aaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 13864011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 18925325 - 18925373
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagc 110  Q
    ||||||||||||||||||  ||||| |||  ||||||||||||||||||    
T  18925325 gtgcaaaatcgcacaattagcaaaatatagaggaaaagtgcaattaagc 18925373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 35080226 - 35080258
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg 94  Q
    |||||||||||||||||| ||||||||||||||    
T  35080226 gtgcaaaatcgcacaattaacaaaagataaggg 35080258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 45758 - 45861
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||  |||||||||||||||||    
T  45758 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaagtgcaattaa 45857  T
Q  109 gcct 112  Q
    ||||    
T  45858 gcct 45861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 45593 - 45536
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  45593 gagggagtgcaaaatcgcacaattaacaaaagatagggggaaaagtgcaattaagcct 45536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 412024 - 411923
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaag 109  Q
    |||| ||||||||||||||| ||||||||||||||          ||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  412024 cagaaagggggcaaaaagatagggtgcaaaatcgcttaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagatagggggtaaagtgcaattaag 411925  T
Q  110 cc 111  Q
    ||    
T  411924 cc 411923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 24775786 - 24775838
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24775786 gtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagcct 24775838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 16555572 - 16555514
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagcct 16555514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 16555768 - 16555871
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         || || ||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  16555768 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataagggggaaaagtgcaatta 16555867  T
Q  108 agcc 111  Q
    ||||    
T  16555868 agcc 16555871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 3930431 - 3930534
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    |||| ||||||||||||||||||||||||||||||           ||||| ||||||||||||||||||  |||||||||  |||||||||||||||||    
T  3930431 cagaaagggggcaaaaagatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 3930530  T
Q  109 gcct 112  Q
    ||||    
T  3930531 gcct 3930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 8488447 - 8488534
Alignment:
Q  24 aaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagataagg-gaaaagtgcaattaagc 110  Q
    |||||||||||||||||||||| |        ||||| ||||||||||||||||||   ||||||||||| |||||||||||||||||    
T  8488447 aaaagatggggtgcaaaatcgctcaaaaaaaagagggggtgcaaaatcgcacaattagaaaaagataaggcgaaaagtgcaattaagc 8488534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 11241439 - 11241389
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataag--ggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  11241439 tgcaaaatcgcacaattaacaaaagataaggaggaaaagtgcaattaagcc 11241389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 13198707 - 13198606
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn--gagggagtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaatt 106  Q
    |||| |||||||||||||||||||||||||||||| |          ||||| ||||||||||||||||||| ||||||||||  | |||||||||||||    
T  13198707 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataaaggagaaaagtgcaatt 13198608  T
Q  107 aa 108  Q
    ||    
T  13198607 aa 13198606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 13198903 - 13198961
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  13198903 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 13198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 22681631 - 22681576
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagc 110  Q
    ||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  22681631 gagggggtgcaaaatcgcacaattgacaaaagataggggggaaagtgcaattaagc 22681576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 7603200 - 7603146
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagc 110  Q
    ||||| ||||||||| |||||||| | |||||||| |||||||||||||||||||    
T  7603200 gagggggtgcaaaattgcacaattaaaaaaagataggggaaaagtgcaattaagc 7603146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7603419 - 7603472
Alignment:
Q  59 ggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||  |||||||| ||| |||||||||||||||||    
T  7603419 ggagtgcaaaatcgcacaattgtaaaaagataggggaaaaagtgcaattaagcc 7603472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 22681882 - 22681934
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||    
T  22681882 gtgcaaaattgcacaattaacaaaagataggagggaaaagtgcaattaagcct 22681934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 35393741 - 35393830
Alignment:
Q  24 aaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagataagg-gaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||| |        ||||| ||||||| ||||||||||  ||||||||| || |||||||||||||||||||    
T  35393741 aaaagatggggtgcaaaatcgctcataaaaaagagggggtgcaaattcgcacaattagcaaaagatagggtgaaaagtgcaattaagcct 35393830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 50678830 - 50678778
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  50678830 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 50678778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 56505744 - 56505692
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  56505744 gtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcct 56505692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 56506574 - 56506629
Alignment:
Q  59 ggagtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||| |||||| ||||||||| ||||||||||||  |||||||||||||||||||    
T  56506574 ggagtacaaaattgcacaattggcaaaagataagggtgaaaagtgcaattaagcct 56506629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 27304773 - 27304718
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcc 111  Q
    ||||| ||||||||||||||||||  || |||||| |||||||| |||||||||||    
T  27304773 gagggggtgcaaaatcgcacaattagcagaagataggggaaaagggcaattaagcc 27304718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 23539890 - 23539840
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||  ||| ||| |||||||||||||||||    
T  23539890 gtgcaaaatcgcacaattggcaaactatagggggaaagtgcaattaagcct 23539840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 49178813 - 49178866
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaatta 107  Q
    ||||| ||||||||||||||||||| ||||||||| ||  ||||||||||||||    
T  49178813 gagggggtgcaaaatcgcacaattggcaaaagataggggagaaaagtgcaatta 49178866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 293220 - 293272
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  ||| |||  ||||||||||||||||||    
T  293220 gtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaagcct 293272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 9023683 - 9023735
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  9023683 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 9023735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 25162313 - 25162366
Alignment:
Q  59 ggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||||||||||| |||||||||||||| ||| ||| |||||  ||||||||||    
T  25162313 ggagtgcaaaatcacacaattgacaaaatatagggggaaagtataattaagcct 25162366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 36095868 - 36095816
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  ||||| |||||||||||||    
T  36095868 gtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcct 36095816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 36096478 - 36096526
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaa 108  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||    
T  36096478 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 36096526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 39744468 - 39744520
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  39744468 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 39744520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 45830203 - 45830251
Alignment:
Q  66 aaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||| ||  ||||||||| |||||||||    
T  45830203 aaaatcgcacaattgacaaaagataggggtgaaaagtgcgattaagcct 45830251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 3930235 - 3930179
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcc 111  Q
    ||||| ||||||||||||| |||| | |||||||| ||| |||||||||||||||||    
T  3930235 gagggggtgcaaaatcgcataattaataaaagataggggaaaaagtgcaattaagcc 3930179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 5206233 - 5206283
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcc 111  Q
    |||||||||||||||||| | ||||||||||||  |||||||||||||||||    
T  5206233 gtgcaaaatcgcacaattaa-aaaagataagggggaaaagtgcaattaagcc 5206283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 9380741 - 9380796
Alignment:
Q  59 ggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||| ||||  |||   |||||||||||||||||||||    
T  9380741 ggagtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcct 9380796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 11241641 - 11241673
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatc 43  Q
    |||| ||||||||||||||||||||||||||||    
T  11241641 cagaaagggggcaaaaagatggggtgcaaaatc 11241673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 23540255 - 23540306
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  23540255 gtgcaaaatcgcacaattgacaaactataggggtgaaaagtgcaattaagcc 23540306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 50679427 - 50679478
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||| ||||||| ||||||||| ||  ||||||||||||||||||    
T  50679427 gtgcaaaatcgtacaattggcaaaagataggggtgaaaagtgcaattaagcc 50679478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 30191026 - 30190922
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||   ||||||||||||||||    
T  30191026 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaatta 30190927  T
Q  108 agcct 112  Q
    |||||    
T  30190926 agcct 30190922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 26737537 - 26737481
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||  ||||||||| | |||||||||||||||||||    
T  26737537 gagggggtgcaaaatcgcacaattagcaaaagataggagaaaagtgcaattaagcct 26737481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 20347461 - 20347519
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  20347461 gagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcct 20347519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 6171206 - 6171156
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  6171206 gtgcaaaatcgcacaattaacaaaagatagggggaaaagtgcaattaagcc 6171156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 7979616 - 7979566
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||  |||||||||||||||||| ||||||    
T  7979616 gtgcaaaatcgcacaattgtcaaactataagggaaaagtgcaataaagcct 7979566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 15321440 - 15321394
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaag 109  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||    
T  15321440 tgcaaaattgcacaattaacaaaagataggggaaaagtgcaattaag 15321394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 2639485 - 2639537
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  2639485 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 2639537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6495724 - 6495776
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataag--ggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||||||||||    
T  6495724 gtgcaaaatcgcacaattcacaaaagatagggaggaaaagtgcaattaagcct 6495776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 18296696 - 18296748
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  18296696 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 18296748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 26841638 - 26841586
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  26841638 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 26841586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 40469680 - 40469780
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgc-nnnnnnnngagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||  ||||||||| |||  |||||||||||||    
T  40469680 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagggggaaaaagtgcaatta 40469779  T
Q  108 a 108  Q
    |    
T  40469780 a 40469780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 24832429 - 24832330
Alignment:
Q  16 agggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||||||||| |         || || ||||||||||||||||||  ||||||||| |||  ||||||||||||||||||    
T  24832429 agggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcct 24832330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 29230333 - 29230281
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-ag-ggaaaagtgcaattaagcct 112  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||||||    
T  29230333 gtgcaaaatcacacaattgacaaaagatagagaggaaaagtgcaattaagcct 29230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 32672893 - 32672842
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    |||||||||||||||||| |||||||||||||   |||||||||||||||||    
T  32672893 gtgcaaaatcgcacaattaacaaaagataaggaacaaaagtgcaattaagcc 32672842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 32673141 - 32673193
Alignment:
Q  57 agggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaa 108  Q
    |||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  32673141 agggggtgcaaaatcgcacaattggcaaaagataggggaaaaagtgcaattaa 32673193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 11883680 - 11883622
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||  |||||||||   |||||||||||||||||||||    
T  11883680 gagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcct 11883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 15920835 - 15920781
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaa 108  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||||||| ||||||    
T  15920835 gagggggtgcaaaatcgcacaattaacaaaagataggagggaaaagtgaaattaa 15920781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 17346038 - 17346089
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagat-aagggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||  |||||||| |||| ||||||||||||||||||    
T  17346038 gtgcaaaatcgcacaattagcaaaagataaaggaaaaagtgcaattaagcct 17346089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 11883923 - 11883980
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||| ||||||||||||||||||  |||||||||   ||||||||||||||||||||    
T  11883923 gagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 11883980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 30191222 - 30191279
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| | ||||||||   ||||||||||||||||||||    
T  30191222 gagggggtgcaaaatcgcacaattaataaaagataggggggaaaagtgcaattaagcc 30191279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 43495481 - 43495535
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgac-aaaagata-agggaaaagtgcaattaa 108  Q
    ||||| ||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  43495481 gagggggtgcaaaatcgcacaattgacaaaaagatagggggaaaagtgcaattaa 43495535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 2638871 - 2638819
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  ||||| |||||||||||||    
T  2638871 gtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcct 2638819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6171459 - 6171511
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    |||||||||| |||||||| ||||||||| |||  ||||||||||||||||||    
T  6171459 gtgcaaaatcccacaattggcaaaagataggggggaaaagtgcaattaagcct 6171511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 8851585 - 8851637
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  8851585 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 8851637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 20347214 - 20347162
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagat--aagggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||| |||||||||  | |||||||||| ||||||||||    
T  20347214 gtgcaaaatcgcacaattaacaaaagatagaggggaaaagtgtaattaagcct 20347162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 7591853 - 7591881
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata 90  Q
    |||||||||||||||||||||||||||||    
T  7591853 gtgcaaaatcgcacaattgacaaaagata 7591881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 7664676 - 7664727
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataag--ggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  ||| |  |||||||||||||||||||    
T  7664676 gtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaattaagcc 7664727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 17345788 - 17345736
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaa 108  Q
    ||||| ||||||||| ||| ||||  ||||||||| |||||||||||||||||    
T  17345788 gagggggtgcaaaattgcataattagcaaaagataggggaaaagtgcaattaa 17345736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 18055319 - 18055367
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-aggg-aaaagtgcaattaa 108  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||    
T  18055319 gtgcaaaatcgcacaattgacaaaaggtagagggaaaaagtgcaattaa 18055367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 26842241 - 26842292
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||| |||||||    
T  26842241 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcacttaagcc 26842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 29343632 - 29343584
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-ag-ggaaaagtgcaattaa 108  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||    
T  29343632 gtgcaaaatcacacaattgacaaaagatagagaggaaaagtgcaattaa 29343584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 47955409 - 47955305
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||   ||||||||||||||||    
T  47955409 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaatta 47955310  T
Q  108 agcct 112  Q
    |||||    
T  47955309 agcct 47955305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 17518359 - 17518302
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataa-gggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  17518359 gagggggtgcaaaatcgcacaattaacaaaagataaggggaaaggtgcaattaagcct 17518302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 17518555 - 17518653
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaag 109  Q
    |||| |||||||||||||||||| |||||||| || |        ||||| ||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  17518555 cagaaagggggcaaaaagatggg-tgcaaaattgctcaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaagtgcaattaag 17518653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 41083011 - 41082909
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaa 108  Q
    |||| ||||||||||||||||||||||||||||||          |||||  |||||||||||||||||| ||||||||| |||  |||||| |||||||    
T  41083011 cagaaagggggcaaaaagatggggtgcaaaatcgctaaaaaaaaagaggggatgcaaaatcgcacaattggcaaaagatagggggaaaaagtacaattaa 41082912  T
Q  109 gcc 111  Q
    |||    
T  41082911 gcc 41082909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 8108996 - 8109048
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  8108996 gtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcct 8109048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 13589656 - 13589713
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||  |||||||||  |||||||||||||||||||||    
T  13589656 gagggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaagcct 13589713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 22149490 - 22149402
Alignment:
Q  24 aaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||| |        ||||| |||||||||||||||||| || ||||||| ||| ||||||||||||||||||    
T  22149490 aaaagatggggtgcaaaatcgctcaaaaaaaagagggggtgcaaaatcgcacaatt-accaaagatagggggaaaagtgcaattaagcct 22149402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 39692003 - 39692055
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  39692003 gtgcaaaatcgcacaattgacaaaatataggggggaaaagtgcaattaagcct 39692055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 41083208 - 41083265
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||| | ||||||||||  |||||||||||||||||||||    
T  41083208 gagggggtgcaaaatcgcacaactaacaaaagatagggggaaaagtgcaattaagcct 41083265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 49284460 - 49284408
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  49284460 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 49284408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 6002288 - 6002237
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    |||||||||| |||||||||||||||||| ||  ||||||||||||||||||    
T  6002288 gtgcaaaatcacacaattgacaaaagataggggtgaaaagtgcaattaagcc 6002237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 48190822 - 48190771
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  48190822 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 48190771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 1176893 - 1176839
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaa 108  Q
    ||||| ||||||||| ||||||||||||||||||| |||  ||||||||||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagatagggggtaaaagtgcaattaa 1176839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 20480218 - 20480167
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||  |||||||||||||||||||||    
T  20480218 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcct 20480167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 31848189 - 31848247
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||| |||||| |||||||||| ||  |||||||||||||||||||    
T  31848189 gagggggtgcaaaatcgtacaattaacaaaagataggggagaaaagtgcaattaagcct 31848247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 47955605 - 47955663
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| | ||||||||   |||||||||||||||||||||    
T  47955605 gagggggtgcaaaatcgcacaattaataaaagataggggggaaaagtgcaattaagcct 47955663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 8108777 - 8108724
Alignment:
Q  57 agggagtgcaaaatcgcacaattgacaaaagataag--ggaaaagtgcaattaa 108  Q
    |||| |||||||||||||||||| |||||||||| |  ||||||||||||||||    
T  8108777 agggggtgcaaaatcgcacaattaacaaaagatagggaggaaaagtgcaattaa 8108724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 20371089 - 20371039
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||||||| ||||||||||||||  ||| ||| |||||||||||||||||    
T  20371089 gtgcaaaattgcacaattgacaaactatagggggaaagtgcaattaagcct 20371039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 50615624 - 50615674
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  50615624 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcc 50615674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 50623452 - 50623502
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  50623452 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcc 50623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 8108978 - 8109007
Alignment:
Q  16 agggggcaaaaagatggggtgcaaaatcgc 45  Q
    ||||||||||||||||||||||||||||||    
T  8108978 agggggcaaaaagatggggtgcaaaatcgc 8109007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 48191358 - 48191410
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    |||||||||||||| |||| ||||||||| ||  |||||||||||||||||||    
T  48191358 gtgcaaaatcgcaccattggcaaaagataggggtgaaaagtgcaattaagcct 48191410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 26814745 - 26814694
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataag--ggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  ||| |  |||||||||||||||||||    
T  26814745 gtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaattaagcc 26814694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 46056952 - 46056904
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagc 110  Q
    ||||||||||||| ||||  ||||||||| ||| |||||||||||||||    
T  46056952 gtgcaaaatcgcaaaattagcaaaagatagggggaaagtgcaattaagc 46056904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 48105119 - 48105170
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||  ||||  ||||||||||||||||||||    
T  48105119 gtgcaaaatcgcacaattggcaaactataagggggaaaagtgcaattaagcc 48105170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 1371 - 1474
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||    
T  1371 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaaagtgcaatta 1470  T
Q  108 agcc 111  Q
    ||||    
T  1471 agcc 1474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 1175 - 1118
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| |||||||||| |||  |||||||||||||||||    
T  1175 gagggggtgcaaaatcgcacaattaacaaaagatagggggaaaaagtgcaattaagcc 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 10293711 - 10293623
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagataagggaaaa 98  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||||||||||||| |||||||    
T  10293711 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggaaaa 10293623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 20968971 - 20969073
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaa 108  Q
    |||| |||||||||||||||||||||||||||||| |         | || ||||||||||||||||||| |||||||||   |||||||||||||||||    
T  20968971 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaaaggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaa 20969070  T
Q  109 gcc 111  Q
    |||    
T  20969071 gcc 20969073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 10293906 - 10293963
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||| |||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  10293906 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 10293963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 28702331 - 28702278
Alignment:
Q  59 ggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||| |||||||||    
T  28702331 ggagtgcaaaatcgcataattgacaaaagatagaggaaaaagtgaaattaagcc 28702278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 36180604 - 36180555
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||  ||| |||||| ||||||||||||||    
T  36180604 tgcaaaatcgcacaattgacaaactataggggaaatgtgcaattaagcct 36180555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 47665962 - 47665910
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||||||||    
T  47665962 gtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagcct 47665910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 8314064 - 8314013
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||| ||| ||  ||||||||||||||||||    
T  8314064 gtgcaaaatcgcacaattgacaaaatataggggagaaaagtgcaattaagcc 8314013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 8315085 - 8315136
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  8315085 gtgcaaaatcgcacaattgacaaaatataggggggaaagtgcaattaagcct 8315136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 20968775 - 20968717
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| ||||||||||   |||||| ||||||||||||||    
T  20968775 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaggtgcaattaagcct 20968717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 47871125 - 47871176
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||||||    
T  47871125 gtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaagcct 47871176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 1101087 - 1101141
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgac-aaaagataaggg-aaaagtgcaattaa 108  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  1101087 gagggggtgcaaaatcgcacaattgacaaaaagataggggcaaaagtgcaattaa 1101141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 3353178 - 3353128
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  3353178 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcc 3353128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 17441064 - 17441118
Alignment:
Q  60 gagtgcaaaatcgcacaattgacaaaagata-ag-ggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||| |||||||||| || |||||| |||||||||||||    
T  17441064 gagtgcaaaatcgcacaattaacaaaagatagagaggaaaaatgcaattaagcct 17441118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 18874992 - 18874958
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgc 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  18874992 cagaaagggggcaaaaagatggggtgcaaaatcgc 18874958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 21896514 - 21896564
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||| ||| ||| |||| ||||||||||||    
T  21896514 gtgcaaaatcgcacaattgacaaaatataggggaaaaaatgcaattaagcc 21896564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 42673299 - 42673349
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||||||    
T  42673299 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcc 42673349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 14015745 - 14015697
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaa 108  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||||||||    
T  14015745 gtgcaaaatcgcacgattgacaaaagataaaggaaaaaagtgcaattaa 14015697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 26540747 - 26540694
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaa 108  Q
    ||||| ||||||||| ||||||||||||||| ||| ||| ||||||||||||||    
T  26540747 gagggggtgcaaaattgcacaattgacaaaaaataggggcaaaagtgcaattaa 26540694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 42627550 - 42627599
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    ||||||||| |||||||  ||||||||| |||||||||||||||||||||    
T  42627550 tgcaaaatcacacaattagcaaaagatagagggaaaagtgcaattaagcc 42627599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 53687939 - 53687887
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  53687939 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 53687887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 53688303 - 53688356
Alignment:
Q  59 ggagtgcaaaatcgcacaattgacaaaagataaggga-aaagtgcaattaagcc 111  Q
    |||||||||||||||||||||| ||||  ||| |||| ||||||||||||||||    
T  53688303 ggagtgcaaaatcgcacaattggcaaactataggggagaaagtgcaattaagcc 53688356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 3644786 - 3644837
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaattaagcc 111  Q
    |||||||||||||||||| |||||| ||||  ||||||| ||||||||||||    
T  3644786 gtgcaaaatcgcacaattaacaaaaaataagggggaaaaatgcaattaagcc 3644837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 17372597 - 17372645
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagc 110  Q
    ||||||||||||||||||   |||| ||| |||||||||||||||||||    
T  17372597 gtgcaaaatcgcacaattagtaaaatataggggaaaagtgcaattaagc 17372645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 18433281 - 18433371
Alignment:
Q  24 aaaagatggggtgcaaaatcgcgcnnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||| |        ||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  18433281 aaaagatggggtgcaaaatcgctcaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 18433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 34147190 - 34147140
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  34147190 gtgcaaaatcgcacaattgataaactataagggaaaagtgcaattaagcct 34147140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 23011385 - 23011432
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaa 108  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  23011385 gtgcaaaatcgcacaattaacaaaagataagggaaaaagtgcaattaa 23011432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 25175148 - 25175206
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  25175148 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 25175206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 31569957 - 31569910
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||    
T  31569957 gtgcaaaatcgcacaattgacaaaagatagggggaaaagtgcaattaa 31569910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 33324835 - 33324893
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    ||||| |||||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  33324835 gagggggtgcaaaatcacacaattgacaaaagataggggaaaaaagtgcaattaagcct 33324893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 5187828 - 5187885
Alignment:
Q  57 agggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    |||| ||||||||| |||||||| ||||||||||||||  ||||||||||||||||||    
T  5187828 agggggtgcaaaattgcacaattaacaaaagataaggggcaaaagtgcaattaagcct 5187885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 25115860 - 25115756
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnnga-gggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         | ||| |||||||||| |||||||| ||||||||| |||  |||||||||||||    
T  25115860 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaaagggggtgcaaaatcacacaattggcaaaagataggggggaaaagtgcaatta 25115761  T
Q  108 agcct 112  Q
    |||||    
T  25115760 agcct 25115756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 25116064 - 25116116
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  25116064 gtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 25116116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 25174952 - 25174848
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnnga-gggagtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         | ||| |||||||||| |||||||| ||||||||| |||  |||||||||||||    
T  25174952 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaaagggggtgcaaaatcacacaattggcaaaagataggggggaaaagtgcaatta 25174853  T
Q  108 agcct 112  Q
    |||||    
T  25174852 agcct 25174848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 12441320 - 12441364
Alignment:
Q  67 aaatcgcacaattgacaaaagataagggaaaagtgcaattaagcc 111  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||    
T  12441320 aaatcgcacaattagcaaaagataggggaaaagtgcaattaagcc 12441364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 18433118 - 18433015
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgc-nnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         || || ||||||||||||||||||  |||||||||   ||||||||||||||||    
T  18433118 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaatta 18433019  T
Q  108 agcc 111  Q
    ||||    
T  18433018 agcc 18433015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 18817614 - 18817665
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  18817614 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 18817665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 43464195 - 43464246
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||  |||||||||||||||||||||    
T  43464195 gtgcaaaatcgcacaattgacaaactatagggggaaaagtgcaattaagcct 43464246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 9665606 - 9665560
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaa 108  Q
    ||||||||| ||||||||  ||||||||| |||||||||||||||||    
T  9665606 gtgcaaaattgcacaattagcaaaagataggggaaaagtgcaattaa 9665560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 22429176 - 22429210
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgc 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  22429176 cagaaagggggcaaaaagatggggtgcaaaatcgc 22429210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 23011129 - 23011079
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataa-gggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||||||||||    
T  23011129 gtgcaaaatcgcacaattagcaaaagataaggggaaaaatgcaattaagcc 23011079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 34576968 - 34576934
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgc 45  Q
    |||| ||||||||||||||||||||||||||||||    
T  34576968 cagaaagggggcaaaaagatggggtgcaaaatcgc 34576934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 11351430 - 11351478
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaa 108  Q
    ||||||||||||||||||| |||||||||  || |||||||||||||||    
T  11351430 gtgcaaaatcgcacaattggcaaaagataggagtgaaaagtgcaattaa 11351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 18817003 - 18816951
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  ||||| |||||||||||||    
T  18817003 gtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcct 18816951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 19514966 - 19515018
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  19514966 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 19515018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 26020501 - 26020449
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataag--ggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||  ||||||||| |  ||||||||||||||||||||    
T  26020501 gtgcaaaatcgcacaattagcaaaagatagggaggaaaagtgcaattaagcct 26020449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 34147513 - 34147565
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  ||| |||  ||||||||||||||||||    
T  34147513 gtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaagcct 34147565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12441187 - 12441242
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgac-aaaagataaggg--aaaagtgcaattaa 108  Q
    |||||||| |||||||||||||||||| |||||||| |||  ||||||||||||||    
T  12441187 gagggagtacaaaatcgcacaattgacaaaaagatagggggcaaaagtgcaattaa 12441242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 6648 - 6750
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||  |||||||||  |||||||||||||||||    
T  6648 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaa 6747  T
Q  109 gcc 111  Q
    |||    
T  6748 gcc 6750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 6451 - 6393
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||  |||||||||   |||||||||||||||||||||    
T  6451 gagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcct 6393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 3403940 - 3404044
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaatta 107  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||  |||||||||   ||||||||||||||||    
T  3403940 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaatta 3404039  T
Q  108 agcct 112  Q
    |||||    
T  3404040 agcct 3404044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 18241911 - 18241853
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  18241911 gagggggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 18241853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 21032081 - 21031978
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgc-nnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||  |||||| ||  |||||||||||||||||    
T  21032081 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagttagggggaaaagtgcaattaa 21031982  T
Q  109 gcct 112  Q
    ||||    
T  21031981 gcct 21031978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 23250648 - 23250591
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcct 112  Q
    ||||| |||||| ||| |||||||||||||||||| ||| ||||||||||||||||||    
T  23250648 gagggggtgcaagatctcacaattgacaaaagataggggaaaaagtgcaattaagcct 23250591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 33829639 - 33829691
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  33829639 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcct 33829691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 18242107 - 18242187
Alignment:
Q  11 cagagagggggcaaaaagatggggtgcaaaatcgcgc-nnnnnnnngagggagtgcaaaatcgcacaattgacaaaagata 90  Q
    |||| |||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||| |||||||||    
T  18242107 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagata 18242187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 33829041 - 33828990
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  33829041 gtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 33828990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 10039726 - 10039675
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcct 112  Q
    ||||||||||||||||||  ||||||||| ||| ||||||||||||||||||    
T  10039726 gtgcaaaatcgcacaattagcaaaagatagggggaaaagtgcaattaagcct 10039675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 21032285 - 21032335
Alignment:
Q  64 gcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  21032285 gcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcct 21032335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 11656779 - 11656836
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||| ||||||||||||||||||  |||||||||  || ||||||||||||||||||    
T  11656779 gagggggtgcaaaatcgcacaattagcaaaagataggagagaaaagtgcaattaagcc 11656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 31598732 - 31598778
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  31598732 tgcaaaatcgcacaattaacaaaagatagggggaaaagtgcaattaa 31598778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 7654551 - 7654603
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  7654551 gtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 7654603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 13579648 - 13579705
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagg-gaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||  |||| |||| || |||||||||||||||||||    
T  13579648 gagggggtgcaaaatcgcacaattagcaaacgatagggagaaaagtgcaattaagcct 13579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 2762776 - 2762828
Alignment:
Q  60 gagtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||| |||||| ||||||| ||||||||||   |||||||||||||||||||    
T  2762776 gagtgtaaaatcacacaattaacaaaagatagaagaaaagtgcaattaagcct 2762828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 3403768 - 3403717
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||  |||||||||   ||||||||||||||||||||    
T  3403768 gtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 3403717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 33972050 - 33971994
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcc 111  Q
    ||||| ||||||||||| |||||| |||||||||| ||| |||| ||||||||||||    
T  33972050 gagggggtgcaaaatcgtacaattaacaaaagataggggaaaaactgcaattaagcc 33971994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 25327 - 25424
Alignment:
Q  18 ggggcaaaaagatggggtgcaaaatcgcgcnnnnnnnn-gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||  |||||||||   |||||||||||||||||||||    
T  25327 ggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcct 25424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 439203 - 439254
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    |||||||||||||||||  |||||||||||||  ||||||||||||||||||    
T  439203 tgcaaaatcgcacaattagcaaaagataaggggaaaaagtgcaattaagcct 439254  T

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Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 183414 - 183367
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaa 108  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||    
T  183414 gtgcaaaatcgtacaattgacaaaagatagggggaaaagtgcaattaa 183367  T

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Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 438987 - 438930
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcc 111  Q
    ||||| ||||||||||||||||||  |||||||||   ||||||||||||||||||||    
T  438987 gagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 438930  T

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Target: scaffold0176 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 20048 - 20098
Alignment:
Q  64 gcaaaatcgcacaattgacaaaagataa--gggaaaagtgcaattaagcct 112  Q
    ||||||||||||||||||||||  ||||  |||||||||||||||||||||    
T  20048 gcaaaatcgcacaattgacaaactataagggggaaaagtgcaattaagcct 20098  T

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Target: scaffold1221 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 1561 - 1511
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagata-agggaaaagtgcaattaagcc 111  Q
    |||||||||| |||||||| ||||||||| ||| |||||||||||||||||    
T  1561 gtgcaaaatcacacaattggcaaaagatagaggaaaaagtgcaattaagcc 1511  T

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Target: scaffold0069 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 50124 - 50074
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagggaaaagtgcaattaagcct 112  Q
    ||||||||| ||||||||||||||  ||| ||| |||||||||||||||||    
T  50124 gtgcaaaattgcacaattgacaaactatagggggaaagtgcaattaagcct 50074  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 205743 - 205686
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataagg-gaaaagtgcaattaagcct 112  Q
    ||||| ||||||||||||||||||  ||||||||| || ||||| |||||||||||||    
T  205743 gagggggtgcaaaatcgcacaattagcaaaagatagggagaaaaatgcaattaagcct 205686  T

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Target: scaffold0535 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 10062 - 10011
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagataaggg--aaaagtgcaattaagcct 112  Q
    |||||||||| ||||||| ||||||||| |||  ||||||||||||||||||    
T  10062 tgcaaaatcgtacaattggcaaaagatagggggcaaaagtgcaattaagcct 10011  T

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Target: scaffold0460 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 380 - 329
Alignment:
Q  63 tgcaaaatcgcacaattgacaaaagata--agggaaaagtgcaattaagcct 112  Q
    |||||||||||||||||||||||  |||   |||||||||||||||||||||    
T  380 tgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcct 329  T

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Target: scaffold0376 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 7597 - 7653
Alignment:
Q  56 gagggagtgcaaaatcgcacaattgacaaaagataaggg-aaaagtgcaattaagcc 111  Q
    ||||| || |||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  7597 gagggggtacaaaatcgcacaattagcaaaagataggggaaaaagtgcaattaagcc 7653  T

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Target: scaffold0328 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 6798 - 6849
Alignment:
Q  62 gtgcaaaatcgcacaattgacaaaagataagg--gaaaagtgcaattaagcc 111  Q
    ||||||||||||||||||| ||||||||| ||  ||||| ||||||||||||    
T  6798 gtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcc 6849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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