View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6002_high_11 (Length: 238)

Name: NF6002_high_11
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6002_high_11
NF6002_high_11
[»] chr6 (3 HSPs)
chr6 (9-238)||(31492508-31492737)
chr6 (9-238)||(31497897-31498126)
chr6 (9-238)||(31503284-31503513)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 31492737 - 31492508
Alignment:
Q  9 catcatcaccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31492737 catcatcaccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaa 31492638  T
Q  109 tctttcaaaacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31492637 tctttcaaaacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtc 31492538  T
Q  209 gctggaaccggtggagcctgtggataagcc 238  Q
    ||||||||||||||||| ||||||||||||    
T  31492537 gctggaaccggtggagcttgtggataagcc 31492508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 31498126 - 31497897
Alignment:
Q  9 catcatcaccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31498126 catcatcaccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaa 31498027  T
Q  109 tctttcaaaacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31498026 tctttcaaaacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtc 31497927  T
Q  209 gctggaaccggtggagcctgtggataagcc 238  Q
    ||||||||||||||||| ||||||||||||    
T  31497926 gctggaaccggtggagcttgtggataagcc 31497897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 31503513 - 31503284
Alignment:
Q  9 catcatcaccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503513 catcatcaccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaa 31503414  T
Q  109 tctttcaaaacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503413 tctttcaaaacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtc 31503314  T
Q  209 gctggaaccggtggagcctgtggataagcc 238  Q
    ||||||||||||||||| ||||||||||||    
T  31503313 gctggaaccggtggagcttgtggataagcc 31503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University