View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6002_high_4 (Length: 453)

Name: NF6002_high_4
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6002_high_4
NF6002_high_4
[»] chr2 (2 HSPs)
chr2 (13-436)||(18242983-18243405)
chr2 (94-147)||(19889838-19889892)
[»] chr3 (3 HSPs)
chr3 (54-146)||(44291199-44291289)
chr3 (94-147)||(27144092-27144146)
chr3 (94-151)||(17109498-17109555)
[»] scaffold1372 (1 HSPs)
scaffold1372 (57-146)||(1240-1327)
[»] chr5 (6 HSPs)
chr5 (13-55)||(21105110-21105152)
chr5 (94-146)||(18677895-18677947)
chr5 (13-51)||(21103018-21103056)
chr5 (13-55)||(21106158-21106200)
chr5 (13-51)||(21107209-21107247)
chr5 (13-55)||(21104062-21104104)
[»] chr8 (4 HSPs)
chr8 (13-52)||(28922747-28922786)
chr8 (54-143)||(28462513-28462603)
chr8 (105-146)||(13904005-13904046)
chr8 (105-138)||(20822418-20822451)
[»] chr6 (2 HSPs)
chr6 (97-147)||(17506361-17506412)
chr6 (110-147)||(35044038-35044075)
[»] chr1 (2 HSPs)
chr1 (94-146)||(48282859-48282912)
chr1 (110-147)||(45484988-45485025)
[»] scaffold0006 (1 HSPs)
scaffold0006 (94-147)||(38893-38947)
[»] scaffold0068 (1 HSPs)
scaffold0068 (94-142)||(52104-52152)
[»] chr7 (1 HSPs)
chr7 (103-146)||(43118907-43118951)
[»] chr4 (1 HSPs)
chr4 (110-146)||(11893401-11893437)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 18243405 - 18242983
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttcctttaataaaaagtgaaagtttatatttccaagacnnnnnnnttctattcatagatttctt 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       || |||| ||||||| |||    
T  18243405 aatataacgacaaaatatgtcgtgcacaatagtattttcctttaataaaaagtgaaagtttatatttccaaaacaaaaaattt-tatttatagattcctt 18243307  T
Q  113 aaccagtgccccggagcaccggttaacaagacccataacgatatacaatgttgtttattttatgataggttaaaatacacaaaaattgcacattgcttta 212  Q
    ||||||||  |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  18243306 aaccagtgttccggggcaccggttaacaagactcataacgatatacaatgttgttcattttatgataggttaaaatacacaaaagttgcacattgcttta 18243207  T
Q  213 aaactaagtctcctcaattcattgagacgctttttaactaagaaaactaagacgattcaaataacttttagactcaaaacaaacaatacttcacagaaac 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |    
T  18243206 aaactaagtctcctcaattcattgagacgctttttaactaagaaaattaagacgattcagataacttttaaactcaaaacaaacaatacttcacagaagc 18243107  T
Q  313 ggtgtaaaaagctcgagtacagacaaagttcatgtgggactaatgcatgacaattagttgttaataatcgcgacattagtcttccagttaacaagaagaa 412  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||    
T  18243106 ggtgtaaaaagctcgagtacaaacaaagttcatgtgggactaatgcatgacaattacttgttaataatcgcgacattagtattccagttagcaagaagaa 18243007  T
Q  413 tctatagccaccagttgcatttgc 436  Q
    || |||||||||||||||||||||    
T  18243006 tccatagccaccagttgcatttgc 18242983  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 19889838 - 19889892
Alignment:
Q  94 ttctattcatagatttcttaaccagtgccccgga-gcaccggttaacaagaccca 147  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||    
T  19889838 ttctatttatagatttcttaaccagtgccccggaggcatcggttaacaataccca 19889892  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 44291289 - 44291199
Alignment:
Q  54 ttaataaaaagtgaaagtttatatttccaagacnnnnnnnttctattcatagatttcttaaccagtgccccggagcaccggttaacaagaccc 146  Q
    |||||||||||||| ||||||||||||||||||       ||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||    
T  44291289 ttaataaaaagtgacagtttatatttccaagacagaaa--ttctatttatagattccttaaccagtgccccggggcactggttaacaagaccc 44291199  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 27144092 - 27144146
Alignment:
Q  94 ttctattcatagatttcttaaccagtgccccg-gagcaccggttaacaagaccca 147  Q
    ||||||| ||||||||||||||||||||| || | ||||||||||||||||||||    
T  27144092 ttctatttatagatttcttaaccagtgcctcgagggcaccggttaacaagaccca 27144146  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 17109555 - 17109498
Alignment:
Q  94 ttctattcatagatttcttaaccagtgccccggagcaccggttaacaagacccataac 151  Q
    ||||||| ||| ||||||||||| |||||||  ||||| |||||||||||||| ||||    
T  17109555 ttctatttataaatttcttaacccgtgcccccaagcactggttaacaagacccttaac 17109498  T

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Target: scaffold1372 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 1327 - 1240
Alignment:
Q  57 ataaaaagtgaaagtttatatttccaagacnnnnnnnttctattcatagatttcttaaccagtgccccggagcaccggttaacaagaccc 146  Q
    ||||||||||| ||||||||||||||||||       ||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||    
T  1327 ataaaaagtgacagtttatatttccaagacagaaa--ttctatttatagattccttaacccgtgccccggggcaccggttaacaagaccc 1240  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 21105152 - 21105110
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttccttt 55  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  21105152 aatataacgacaaaatatgtcgtgcacaatagtattttccttt 21105110  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 18677947 - 18677895
Alignment:
Q  94 ttctattcatagatttcttaaccagtgccccggagcaccggttaacaagaccc 146  Q
    ||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||    
T  18677947 ttctatttatagattccttaaccagtgctccggaacaccggttaacaagaccc 18677895  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 21103056 - 21103018
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttc 51  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  21103056 aatataacgacaaaatatgtcgtgcacaatagtattttc 21103018  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 21106200 - 21106158
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttccttt 55  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  21106200 aatataacaacaaaatatgtcgtgcacaatagtattttccttt 21106158  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 21107247 - 21107209
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttc 51  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  21107247 aatataacgacaaaatatgtcgtgcacaatagtattttc 21107209  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 21104104 - 21104062
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttccttt 55  Q
    |||||||| | ||||||||| ||||||||||||||||||||||    
T  21104104 aatataacaacaaaatatgttgtgcacaatagtattttccttt 21104062  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 28922747 - 28922786
Alignment:
Q  13 aatataacgataaaatatgtcgtgcacaatagtattttcc 52  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28922747 aatataacgacaaaatatgtcgtgcacaatagtattttcc 28922786  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 28462603 - 28462513
Alignment:
Q  54 ttaataaaaagtgaaagtttatatttccaagacnnnnnnnttctattcatagatttcttaaccagtg--ccccggagcaccggttaacaaga 143  Q
    |||||||||||||| ||||||||||||||||||       ||||||| |||||||  ||||||||||  ||||||| |||| ||||||||||    
T  28462603 ttaataaaaagtgatagtttatatttccaagac-aaaaaattctatttatagattctttaaccagtgccccccggaacaccagttaacaaga 28462513  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 13904046 - 13904005
Alignment:
Q  105 gatttcttaaccagtgccccggagcaccggttaacaagaccc 146  Q
    |||| ||||||||||||||||| |||||||||||||| ||||    
T  13904046 gattccttaaccagtgccccggggcaccggttaacaaaaccc 13904005  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 20822451 - 20822418
Alignment:
Q  105 gatttcttaaccagtgccccggagcaccggttaa 138  Q
    |||| |||||||||||||||||||||||||||||    
T  20822451 gattccttaaccagtgccccggagcaccggttaa 20822418  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 17506361 - 17506412
Alignment:
Q  97 tattcatagatttcttaaccagtgcc-ccggagcaccggttaacaagaccca 147  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  17506361 tatttatagatttcttaaccagtgcctccggagcactggttaacaagaccca 17506412  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 35044038 - 35044075
Alignment:
Q  110 cttaaccagtgccccggagcaccggttaacaagaccca 147  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  35044038 cttaaccagtgccccggggcaccggttaacatgaccca 35044075  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 48282912 - 48282859
Alignment:
Q  94 ttctattcatagatttcttaaccagtgcccc-ggagcaccggttaacaagaccc 146  Q
    ||||||| ||||||| ||||||||||||||| || |||||||||||||||||||    
T  48282912 ttctatttatagattccttaaccagtgccccgggggcaccggttaacaagaccc 48282859  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 45485025 - 45484988
Alignment:
Q  110 cttaaccagtgccccggagcaccggttaacaagaccca 147  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  45485025 cttaaccagtgccccgaagcaccggttaacatgaccca 45484988  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 38893 - 38947
Alignment:
Q  94 ttctattcatagatttcttaaccagtgccccggag-caccggttaacaagaccca 147  Q
    ||||||| |||||||| ||||||||| ||||| || |||||||||||||||||||    
T  38893 ttctatttatagattttttaaccagtaccccgaaggcaccggttaacaagaccca 38947  T

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Target: scaffold0068 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 52104 - 52152
Alignment:
Q  94 ttctattcatagatttcttaaccagtgccccggagcaccggttaacaag 142  Q
    ||||||| ||||||||||||||| |||| |||||  |||||||||||||    
T  52104 ttctatttatagatttcttaacccgtgctccggaagaccggttaacaag 52152  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 43118907 - 43118951
Alignment:
Q  103 tagatttcttaaccagtgccccggag-caccggttaacaagaccc 146  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||    
T  43118907 tagatttcttaaccattgccctggaggcaccggttaacaagaccc 43118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 11893437 - 11893401
Alignment:
Q  110 cttaaccagtgccccggagcaccggttaacaagaccc 146  Q
    |||||||||||||||||||||||||||| || |||||    
T  11893437 cttaaccagtgccccggagcaccggttagcatgaccc 11893401  T

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